Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2039
(660 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U36188-1|AAA93254.1| 435|Homo sapiens assembly protein 50 protein. 67 6e-11
D63475-1|BAA09762.2| 438|Homo sapiens KIAA0109 protein. 67 6e-11
BT007308-1|AAP35972.1| 435|Homo sapiens adaptor-related protein... 67 6e-11
BC014030-1|AAH14030.1| 435|Homo sapiens adaptor-related protein... 67 6e-11
BC013796-1|AAH13796.1| 433|Homo sapiens adaptor-related protein... 67 6e-11
BC004996-1|AAH04996.1| 435|Homo sapiens adaptor-related protein... 67 6e-11
U47004-2|AAB19039.1| 1690|Homo sapiens collagen type IV a6 chain... 30 6.4
U47004-1|AAB19038.1| 1691|Homo sapiens collagen type IV a6 chain... 30 6.4
U04845-1|AAA19569.2| 1691|Homo sapiens A type IV collagen protein. 30 6.4
L22763-1|AAA16338.1| 542|Homo sapiens alpha-6 type IV collagen ... 30 6.4
D63562-1|BAA09791.1| 1600|Homo sapiens a6(IV) collagen protein. 30 6.4
D21337-1|BAA04809.1| 1678|Homo sapiens collagen protein. 30 6.4
AL136080-2|CAI40758.1| 1691|Homo sapiens collagen type IV alpha ... 30 6.4
AL136080-1|CAI40756.1| 1690|Homo sapiens collagen type IV alpha ... 30 6.4
AL109943-2|CAI42995.1| 1691|Homo sapiens collagen type IV alpha ... 30 6.4
AL109943-1|CAI42993.1| 1690|Homo sapiens collagen type IV alpha ... 30 6.4
AL034369-3|CAI42047.1| 1691|Homo sapiens collagen type IV alpha ... 30 6.4
AL034369-2|CAI42045.1| 1690|Homo sapiens collagen type IV alpha ... 30 6.4
AL031177-13|CAI43140.1| 1691|Homo sapiens collagen type IV alpha... 30 6.4
AL031177-12|CAI43139.1| 1690|Homo sapiens collagen type IV alpha... 30 6.4
>U36188-1|AAA93254.1| 435|Homo sapiens assembly protein 50 protein.
Length = 435
Score = 66.9 bits (156), Expect = 6e-11
Identities = 29/40 (72%), Positives = 31/40 (77%)
Frame = +2
Query: 350 PLHPPDSRFATWKVFEPKLNYSDHDVIKWVRYIGRSGLYE 469
P P + KVFEPKLNYSDHDVIKWVRYIGRSG+YE
Sbjct: 393 PFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYE 432
Score = 66.1 bits (154), Expect = 1e-10
Identities = 29/39 (74%), Positives = 35/39 (89%)
Frame = +3
Query: 225 MFRIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMGF 341
+++IKRMAGMKE+Q+SAEIELL T+ KKKW RPPISM F
Sbjct: 352 VWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNF 390
Score = 35.5 bits (78), Expect = 0.17
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +1
Query: 325 PSPWGFEVPFAPSGFKVRYLE 387
P FEVPFAPSG KVRYL+
Sbjct: 385 PISMNFEVPFAPSGLKVRYLK 405
>D63475-1|BAA09762.2| 438|Homo sapiens KIAA0109 protein.
Length = 438
Score = 66.9 bits (156), Expect = 6e-11
Identities = 29/40 (72%), Positives = 31/40 (77%)
Frame = +2
Query: 350 PLHPPDSRFATWKVFEPKLNYSDHDVIKWVRYIGRSGLYE 469
P P + KVFEPKLNYSDHDVIKWVRYIGRSG+YE
Sbjct: 396 PFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYE 435
Score = 66.1 bits (154), Expect = 1e-10
Identities = 29/39 (74%), Positives = 35/39 (89%)
Frame = +3
Query: 225 MFRIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMGF 341
+++IKRMAGMKE+Q+SAEIELL T+ KKKW RPPISM F
Sbjct: 355 VWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNF 393
Score = 35.5 bits (78), Expect = 0.17
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +1
Query: 325 PSPWGFEVPFAPSGFKVRYLE 387
P FEVPFAPSG KVRYL+
Sbjct: 388 PISMNFEVPFAPSGLKVRYLK 408
>BT007308-1|AAP35972.1| 435|Homo sapiens adaptor-related protein
complex 2, mu 1 subunit protein.
Length = 435
Score = 66.9 bits (156), Expect = 6e-11
Identities = 29/40 (72%), Positives = 31/40 (77%)
Frame = +2
Query: 350 PLHPPDSRFATWKVFEPKLNYSDHDVIKWVRYIGRSGLYE 469
P P + KVFEPKLNYSDHDVIKWVRYIGRSG+YE
Sbjct: 393 PFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYE 432
Score = 66.1 bits (154), Expect = 1e-10
Identities = 29/39 (74%), Positives = 35/39 (89%)
Frame = +3
Query: 225 MFRIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMGF 341
+++IKRMAGMKE+Q+SAEIELL T+ KKKW RPPISM F
Sbjct: 352 VWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNF 390
Score = 35.5 bits (78), Expect = 0.17
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +1
Query: 325 PSPWGFEVPFAPSGFKVRYLE 387
P FEVPFAPSG KVRYL+
Sbjct: 385 PISMNFEVPFAPSGLKVRYLK 405
>BC014030-1|AAH14030.1| 435|Homo sapiens adaptor-related protein
complex 2, mu 1 subunit protein.
Length = 435
Score = 66.9 bits (156), Expect = 6e-11
Identities = 29/40 (72%), Positives = 31/40 (77%)
Frame = +2
Query: 350 PLHPPDSRFATWKVFEPKLNYSDHDVIKWVRYIGRSGLYE 469
P P + KVFEPKLNYSDHDVIKWVRYIGRSG+YE
Sbjct: 393 PFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYE 432
Score = 66.1 bits (154), Expect = 1e-10
Identities = 29/39 (74%), Positives = 35/39 (89%)
Frame = +3
Query: 225 MFRIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMGF 341
+++IKRMAGMKE+Q+SAEIELL T+ KKKW RPPISM F
Sbjct: 352 VWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNF 390
Score = 35.5 bits (78), Expect = 0.17
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +1
Query: 325 PSPWGFEVPFAPSGFKVRYLE 387
P FEVPFAPSG KVRYL+
Sbjct: 385 PISMNFEVPFAPSGLKVRYLK 405
>BC013796-1|AAH13796.1| 433|Homo sapiens adaptor-related protein
complex 2, mu 1 subunit protein.
Length = 433
Score = 66.9 bits (156), Expect = 6e-11
Identities = 29/40 (72%), Positives = 31/40 (77%)
Frame = +2
Query: 350 PLHPPDSRFATWKVFEPKLNYSDHDVIKWVRYIGRSGLYE 469
P P + KVFEPKLNYSDHDVIKWVRYIGRSG+YE
Sbjct: 391 PFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYE 430
Score = 66.1 bits (154), Expect = 1e-10
Identities = 29/39 (74%), Positives = 35/39 (89%)
Frame = +3
Query: 225 MFRIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMGF 341
+++IKRMAGMKE+Q+SAEIELL T+ KKKW RPPISM F
Sbjct: 350 VWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNF 388
Score = 35.5 bits (78), Expect = 0.17
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +1
Query: 325 PSPWGFEVPFAPSGFKVRYLE 387
P FEVPFAPSG KVRYL+
Sbjct: 383 PISMNFEVPFAPSGLKVRYLK 403
>BC004996-1|AAH04996.1| 435|Homo sapiens adaptor-related protein
complex 2, mu 1 subunit protein.
Length = 435
Score = 66.9 bits (156), Expect = 6e-11
Identities = 29/40 (72%), Positives = 31/40 (77%)
Frame = +2
Query: 350 PLHPPDSRFATWKVFEPKLNYSDHDVIKWVRYIGRSGLYE 469
P P + KVFEPKLNYSDHDVIKWVRYIGRSG+YE
Sbjct: 393 PFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYE 432
Score = 66.1 bits (154), Expect = 1e-10
Identities = 29/39 (74%), Positives = 35/39 (89%)
Frame = +3
Query: 225 MFRIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMGF 341
+++IKRMAGMKE+Q+SAEIELL T+ KKKW RPPISM F
Sbjct: 352 VWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNF 390
Score = 35.5 bits (78), Expect = 0.17
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +1
Query: 325 PSPWGFEVPFAPSGFKVRYLE 387
P FEVPFAPSG KVRYL+
Sbjct: 385 PISMNFEVPFAPSGLKVRYLK 405
>U47004-2|AAB19039.1| 1690|Homo sapiens collagen type IV a6 chain
protein.
Length = 1690
Score = 30.3 bits (65), Expect = 6.4
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +1
Query: 301 PRRSGRARPSPWGFEVPFAPSGFK----VRYLEGVRTEAELLGP 420
P + R RP P G + P P GF + L+G R LLGP
Sbjct: 43 PEKGARGRPGPIGIQGPTGPQGFTGSTGLSGLKGERGFPGLLGP 86
>U47004-1|AAB19038.1| 1691|Homo sapiens collagen type IV a6 chain
protein.
Length = 1691
Score = 30.3 bits (65), Expect = 6.4
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +1
Query: 301 PRRSGRARPSPWGFEVPFAPSGFK----VRYLEGVRTEAELLGP 420
P + R RP P G + P P GF + L+G R LLGP
Sbjct: 44 PEKGARGRPGPIGIQGPTGPQGFTGSTGLSGLKGERGFPGLLGP 87
>U04845-1|AAA19569.2| 1691|Homo sapiens A type IV collagen protein.
Length = 1691
Score = 30.3 bits (65), Expect = 6.4
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +1
Query: 301 PRRSGRARPSPWGFEVPFAPSGFK----VRYLEGVRTEAELLGP 420
P + R RP P G + P P GF + L+G R LLGP
Sbjct: 44 PEKGARGRPGPIGIQGPTGPQGFTGSTGLSGLKGERGFPGLLGP 87
>L22763-1|AAA16338.1| 542|Homo sapiens alpha-6 type IV collagen
protein.
Length = 542
Score = 30.3 bits (65), Expect = 6.4
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +1
Query: 301 PRRSGRARPSPWGFEVPFAPSGFK----VRYLEGVRTEAELLGP 420
P + R RP P G + P P GF + L+G R LLGP
Sbjct: 44 PEKGARGRPGPIGIQGPTGPQGFTGSTGLSGLKGERGFPGLLGP 87
>D63562-1|BAA09791.1| 1600|Homo sapiens a6(IV) collagen protein.
Length = 1600
Score = 30.3 bits (65), Expect = 6.4
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +1
Query: 301 PRRSGRARPSPWGFEVPFAPSGFK----VRYLEGVRTEAELLGP 420
P + R RP P G + P P GF + L+G R LLGP
Sbjct: 39 PEKGARGRPGPIGIQGPTGPQGFTGSTGLSGLKGERGFPGLLGP 82
>D21337-1|BAA04809.1| 1678|Homo sapiens collagen protein.
Length = 1678
Score = 30.3 bits (65), Expect = 6.4
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +1
Query: 301 PRRSGRARPSPWGFEVPFAPSGFK----VRYLEGVRTEAELLGP 420
P + R RP P G + P P GF + L+G R LLGP
Sbjct: 43 PEKGARGRPGPIGIQGPTGPQGFTGSTGLSGLKGERGFPGLLGP 86
>AL136080-2|CAI40758.1| 1691|Homo sapiens collagen type IV alpha 6
protein.
Length = 1691
Score = 30.3 bits (65), Expect = 6.4
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +1
Query: 301 PRRSGRARPSPWGFEVPFAPSGFK----VRYLEGVRTEAELLGP 420
P + R RP P G + P P GF + L+G R LLGP
Sbjct: 44 PEKGARGRPGPIGIQGPTGPQGFTGSTGLSGLKGERGFPGLLGP 87
>AL136080-1|CAI40756.1| 1690|Homo sapiens collagen type IV alpha 6
protein.
Length = 1690
Score = 30.3 bits (65), Expect = 6.4
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +1
Query: 301 PRRSGRARPSPWGFEVPFAPSGFK----VRYLEGVRTEAELLGP 420
P + R RP P G + P P GF + L+G R LLGP
Sbjct: 43 PEKGARGRPGPIGIQGPTGPQGFTGSTGLSGLKGERGFPGLLGP 86
>AL109943-2|CAI42995.1| 1691|Homo sapiens collagen type IV alpha 6
protein.
Length = 1691
Score = 30.3 bits (65), Expect = 6.4
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +1
Query: 301 PRRSGRARPSPWGFEVPFAPSGFK----VRYLEGVRTEAELLGP 420
P + R RP P G + P P GF + L+G R LLGP
Sbjct: 44 PEKGARGRPGPIGIQGPTGPQGFTGSTGLSGLKGERGFPGLLGP 87
>AL109943-1|CAI42993.1| 1690|Homo sapiens collagen type IV alpha 6
protein.
Length = 1690
Score = 30.3 bits (65), Expect = 6.4
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +1
Query: 301 PRRSGRARPSPWGFEVPFAPSGFK----VRYLEGVRTEAELLGP 420
P + R RP P G + P P GF + L+G R LLGP
Sbjct: 43 PEKGARGRPGPIGIQGPTGPQGFTGSTGLSGLKGERGFPGLLGP 86
>AL034369-3|CAI42047.1| 1691|Homo sapiens collagen type IV alpha 6
protein.
Length = 1691
Score = 30.3 bits (65), Expect = 6.4
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +1
Query: 301 PRRSGRARPSPWGFEVPFAPSGFK----VRYLEGVRTEAELLGP 420
P + R RP P G + P P GF + L+G R LLGP
Sbjct: 44 PEKGARGRPGPIGIQGPTGPQGFTGSTGLSGLKGERGFPGLLGP 87
>AL034369-2|CAI42045.1| 1690|Homo sapiens collagen type IV alpha 6
protein.
Length = 1690
Score = 30.3 bits (65), Expect = 6.4
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +1
Query: 301 PRRSGRARPSPWGFEVPFAPSGFK----VRYLEGVRTEAELLGP 420
P + R RP P G + P P GF + L+G R LLGP
Sbjct: 43 PEKGARGRPGPIGIQGPTGPQGFTGSTGLSGLKGERGFPGLLGP 86
>AL031177-13|CAI43140.1| 1691|Homo sapiens collagen type IV alpha 6
protein.
Length = 1691
Score = 30.3 bits (65), Expect = 6.4
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +1
Query: 301 PRRSGRARPSPWGFEVPFAPSGFK----VRYLEGVRTEAELLGP 420
P + R RP P G + P P GF + L+G R LLGP
Sbjct: 44 PEKGARGRPGPIGIQGPTGPQGFTGSTGLSGLKGERGFPGLLGP 87
>AL031177-12|CAI43139.1| 1690|Homo sapiens collagen type IV alpha 6
protein.
Length = 1690
Score = 30.3 bits (65), Expect = 6.4
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +1
Query: 301 PRRSGRARPSPWGFEVPFAPSGFK----VRYLEGVRTEAELLGP 420
P + R RP P G + P P GF + L+G R LLGP
Sbjct: 43 PEKGARGRPGPIGIQGPTGPQGFTGSTGLSGLKGERGFPGLLGP 86
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,478,023
Number of Sequences: 237096
Number of extensions: 1750930
Number of successful extensions: 3281
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3281
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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