Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2039
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L26290-1|AAA27981.1|  441|Caenorhabditis elegans clathrin-associ...    68   7e-12
AF099001-8|AAP13778.1|  435|Caenorhabditis elegans Dumpy : short...    68   7e-12
AF099001-7|AAP13777.1|  441|Caenorhabditis elegans Dumpy : short...    68   7e-12
AC025723-12|AAK29938.1|  215|Caenorhabditis elegans Hypothetical...    30   1.7  

>L26290-1|AAA27981.1|  441|Caenorhabditis elegans
           clathrin-associated protein homologueprotein.
          Length = 441

 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 30/40 (75%), Positives = 31/40 (77%)
 Frame = +2

Query: 350 PLHPPDSRFATWKVFEPKLNYSDHDVIKWVRYIGRSGLYE 469
           P  P   +    KVFEPKLNYSDHDVIKWVRYIGRSGLYE
Sbjct: 399 PFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE 438



 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 27/41 (65%), Positives = 34/41 (82%), Gaps = 2/41 (4%)
 Frame = +3

Query: 225 MFRIKRMAGMKETQLSAEIELLETDT--KKKWTRPPISMGF 341
           +++IKRMAGMKE+Q+SAEI+LL T    KKKW RPP+SM F
Sbjct: 356 VWKIKRMAGMKESQISAEIDLLSTGNVEKKKWNRPPVSMNF 396



 Score = 35.5 bits (78), Expect = 0.034
 Identities = 15/21 (71%), Positives = 16/21 (76%)
 Frame = +1

Query: 325 PSPWGFEVPFAPSGFKVRYLE 387
           P    FEVPFAPSG KVRYL+
Sbjct: 391 PVSMNFEVPFAPSGLKVRYLK 411


>AF099001-8|AAP13778.1|  435|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 23, isoform b protein.
          Length = 435

 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 30/40 (75%), Positives = 31/40 (77%)
 Frame = +2

Query: 350 PLHPPDSRFATWKVFEPKLNYSDHDVIKWVRYIGRSGLYE 469
           P  P   +    KVFEPKLNYSDHDVIKWVRYIGRSGLYE
Sbjct: 393 PFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE 432



 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 27/41 (65%), Positives = 34/41 (82%), Gaps = 2/41 (4%)
 Frame = +3

Query: 225 MFRIKRMAGMKETQLSAEIELLETDT--KKKWTRPPISMGF 341
           +++IKRMAGMKE+Q+SAEI+LL T    KKKW RPP+SM F
Sbjct: 350 VWKIKRMAGMKESQISAEIDLLSTGNVEKKKWNRPPVSMNF 390



 Score = 35.5 bits (78), Expect = 0.034
 Identities = 15/21 (71%), Positives = 16/21 (76%)
 Frame = +1

Query: 325 PSPWGFEVPFAPSGFKVRYLE 387
           P    FEVPFAPSG KVRYL+
Sbjct: 385 PVSMNFEVPFAPSGLKVRYLK 405


>AF099001-7|AAP13777.1|  441|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 23, isoform a protein.
          Length = 441

 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 30/40 (75%), Positives = 31/40 (77%)
 Frame = +2

Query: 350 PLHPPDSRFATWKVFEPKLNYSDHDVIKWVRYIGRSGLYE 469
           P  P   +    KVFEPKLNYSDHDVIKWVRYIGRSGLYE
Sbjct: 399 PFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE 438



 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 27/41 (65%), Positives = 34/41 (82%), Gaps = 2/41 (4%)
 Frame = +3

Query: 225 MFRIKRMAGMKETQLSAEIELLETDT--KKKWTRPPISMGF 341
           +++IKRMAGMKE+Q+SAEI+LL T    KKKW RPP+SM F
Sbjct: 356 VWKIKRMAGMKESQISAEIDLLSTGNVEKKKWNRPPVSMNF 396



 Score = 35.5 bits (78), Expect = 0.034
 Identities = 15/21 (71%), Positives = 16/21 (76%)
 Frame = +1

Query: 325 PSPWGFEVPFAPSGFKVRYLE 387
           P    FEVPFAPSG KVRYL+
Sbjct: 391 PVSMNFEVPFAPSGLKVRYLK 411


>AC025723-12|AAK29938.1|  215|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.1 protein.
          Length = 215

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 318 RPPISMGFRSSLCTLRI-QGSLPGRC 392
           RPP S GFR+ LC  R  +G++  RC
Sbjct: 131 RPPTSYGFRAPLCLTRCGRGAVSARC 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,677,456
Number of Sequences: 27780
Number of extensions: 272612
Number of successful extensions: 732
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)