Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2037
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...   223   2e-59
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    31   0.23 
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    27   2.2  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    26   6.6  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   6.6  

>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score =  223 bits (545), Expect = 2e-59
 Identities = 115/206 (55%), Positives = 143/206 (69%), Gaps = 6/206 (2%)
 Frame = +2

Query: 89  PVVDILGDEMTRIIWDLIKEKLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYN 268
           PVV++ GDEMTR+IW +I+EKL+LP++DI+L  YDLG+E RDKT+DQ+T+D A+AI K +
Sbjct: 19  PVVEMDGDEMTRVIWKIIREKLVLPYMDIKLDYYDLGIEARDKTNDQITVDAAKAILKND 78

Query: 269 VGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDKPI 448
           VGIKCATITPDE RV+E+ LKKMWKSPNGTIRNIL GTVFRE I+ KNIP+ + GW  PI
Sbjct: 79  VGIKCATITPDEARVKEYNLKKMWKSPNGTIRNILNGTVFREPILIKNIPKYIPGWTNPI 138

Query: 449 IIGRHAHADQYKATDFCCPRCWYS*NNLQT*IW-*GNKTCSS-----*VQGCXV*HWAMF 610
            IGRHA  DQYK+TD            L+      GN +           G  V   +M+
Sbjct: 139 CIGRHAFGDQYKSTDLVAS----GPGKLELSFTPKGNPSAKETYNVYEFNGSGV-AMSMY 193

Query: 611 NTDASIIDFAHSSFQVCFGQKIPSVL 688
           NTD SI  FAHSSFQ+   +K+P  L
Sbjct: 194 NTDDSIRGFAHSSFQMALQKKMPLYL 219



 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 33/100 (33%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
 Frame = +3

Query: 432 GGTNPSSLDVMLMLINTKQLTFVVPGAGTLEIIFKPESGEAIKHV--VHEYKGAXCSXXX 605
           G TNP  +         K    V  G G LE+ F P+   + K    V+E+ G+  +   
Sbjct: 133 GWTNPICIGRHAFGDQYKSTDLVASGPGKLELSFTPKGNPSAKETYNVYEFNGSGVAMSM 192

Query: 606 XXXXXXXXXXXXXXHFKFALDRKYPLYLSTKNTILXNYEG 725
                          F+ AL +K PLYLSTKNTIL  Y+G
Sbjct: 193 YNTDDSIRGFAHSS-FQMALQKKMPLYLSTKNTILKKYDG 231


>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +2

Query: 101 ILGDEMTRIIWDLIKEKLILPFLDIELHVYDL-GMENRDKTDDQVTIDCAEAIKKYNVGI 277
           I GD + R   + + E      + IE    D+ GME  +K+      +  +++K+  VG+
Sbjct: 26  IPGDGIGRETSNAVTEIFKTANVPIEFEEIDVTGMEKNNKSSGDALHEAIQSLKRNKVGL 85

Query: 278 KCATITPDEK 307
           K    TP EK
Sbjct: 86  KGILFTPFEK 95


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/60 (28%), Positives = 33/60 (55%)
 Frame = -3

Query: 538 GLKIISRVPAPGTTKVSCFVLISMSMTSNDDGFVPPCYKSRYILANNSLPENSTTKNITD 359
           G+ + + +  P  +K +   L+S +++S +   VPP  KSR I+A+ +   +S  K+  D
Sbjct: 524 GIFVENALKQPEDSKQTKVSLMSENLSSKEKTAVPPRQKSRDIIASVTDVISSLDKDFQD 583


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 456 PMMMGLSHPVTSLGIFLQIIASLKTVP 376
           P +MG  + VT+   ++ II SLK +P
Sbjct: 253 PALMGYKNKVTAKATYMVIIQSLKHLP 279


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 149 KLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIK 259
           +LI+ F D ELH +     N+   +     D AEA+K
Sbjct: 400 RLIMKFSDSELHTFLFHCVNKIVANTTENSDSAEAVK 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,978,798
Number of Sequences: 5004
Number of extensions: 61978
Number of successful extensions: 164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)