Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2037
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0109 - 26526691-26526775,26526894-26527019,26527228-265273... 220 8e-58
05_07_0194 + 28327328-28327376,28327699-28327742,28327852-283279... 219 2e-57
01_01_1031 + 8169505-8169553,8169831-8169905,8170395-8170438,817... 192 2e-49
04_04_0457 + 25359486-25359571,25360690-25360782,25361561-253616... 116 2e-26
02_05_0597 + 30245455-30245767,30246693-30246760,30246851-302469... 29 3.0
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 29 5.2
08_02_0103 - 12400494-12400626,12400882-12400958 29 5.2
01_06_1168 - 35073599-35073628,35075574-35076993,35077466-35078847 28 9.1
>01_06_0109 -
26526691-26526775,26526894-26527019,26527228-26527370,
26527521-26527555,26527676-26527791,26527868-26527936,
26528070-26528173,26528253-26528338,26528429-26528530,
26528609-26528662,26528763-26528840,26528936-26528973,
26529235-26529344,26529463-26529506,26530232-26530280
Length = 412
Score = 220 bits (538), Expect = 8e-58
Identities = 100/141 (70%), Positives = 117/141 (82%), Gaps = 1/141 (0%)
Frame = +2
Query: 74 KIK-AGPVVDILGDEMTRIIWDLIKEKLILPFLDIELHVYDLGMENRDKTDDQVTIDCAE 250
KIK A P+V++ GDEMTRI W IK+KLI PFLD+++ YDLG+ +RD TDD+VT++ AE
Sbjct: 5 KIKVANPIVEMDGDEMTRIFWQSIKDKLIFPFLDLDIKYYDLGVLHRDATDDKVTVEAAE 64
Query: 251 AIKKYNVGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVT 430
A KYNV IKCATITPDE RV+EF LK+MWKSPNGTIRNI+ GTVFRE IICKN+PRLV
Sbjct: 65 ATLKYNVAIKCATITPDEARVKEFNLKQMWKSPNGTIRNIINGTVFREPIICKNVPRLVP 124
Query: 431 GWDKPIIIGRHAHADQYKATD 493
GW KPI IGRHA DQY+ATD
Sbjct: 125 GWTKPICIGRHAFGDQYRATD 145
Score = 41.1 bits (92), Expect = 0.001
Identities = 25/76 (32%), Positives = 36/76 (47%)
Frame = +3
Query: 498 VVPGAGTLEIIFKPESGEAIKHVVHEYKGAXCSXXXXXXXXXXXXXXXXXHFKFALDRKY 677
V+ G G L+++F+ + E I V + GA A ++K+
Sbjct: 147 VLKGPGKLKLVFEGKD-EQIDLEVFNFTGAGGVALSMYNTDESIRAFAEASMTTAYEKKW 205
Query: 678 PLYLSTKNTILXNYEG 725
PLYLSTKNTIL Y+G
Sbjct: 206 PLYLSTKNTILKKYDG 221
>05_07_0194 +
28327328-28327376,28327699-28327742,28327852-28327961,
28328250-28328287,28328371-28328448,28328527-28328580,
28328663-28328764,28329152-28329237,28329327-28329430,
28329542-28329610,28329689-28329804,28329949-28329983,
28330152-28330294,28330473-28330598,28330700-28330784
Length = 412
Score = 219 bits (535), Expect = 2e-57
Identities = 115/212 (54%), Positives = 143/212 (67%), Gaps = 6/212 (2%)
Frame = +2
Query: 71 SKIK-AGPVVDILGDEMTRIIWDLIKEKLILPFLDIELHVYDLGMENRDKTDDQVTIDCA 247
+KIK A P+V++ GDEMTR+ W IK+KLI PFL++++ +DLG+ RD+TDD+VT++ A
Sbjct: 4 TKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPYRDQTDDKVTVEAA 63
Query: 248 EAIKKYNVGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLV 427
EA KYNV IKCATITPDE RV+EF LK MWKSPNGTIRNIL GTVFRE IICKNIPRLV
Sbjct: 64 EATLKYNVAIKCATITPDEARVKEFSLKSMWKSPNGTIRNILNGTVFREPIICKNIPRLV 123
Query: 428 TGWDKPIIIGRHAHADQYKATDFCCP-----RCWYS*NNLQT*IW*GNKTCSS*VQGCXV 592
GW KPI IGRHA DQY+ATD + Y + + + N T + V
Sbjct: 124 PGWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVYEGKDEEIELEVFNFTGAGGVA---- 179
Query: 593 *HWAMFNTDASIIDFAHSSFQVCFGQKIPSVL 688
+M+NTD SI FA +S + +K P L
Sbjct: 180 --QSMYNTDESIRSFAEASMATAYEKKWPLYL 209
Score = 41.5 bits (93), Expect = 7e-04
Identities = 24/76 (31%), Positives = 37/76 (48%)
Frame = +3
Query: 498 VVPGAGTLEIIFKPESGEAIKHVVHEYKGAXCSXXXXXXXXXXXXXXXXXHFKFALDRKY 677
V+ G G L+++++ + E I+ V + GA A ++K+
Sbjct: 147 VIKGPGKLKLVYEGKD-EEIELEVFNFTGAGGVAQSMYNTDESIRSFAEASMATAYEKKW 205
Query: 678 PLYLSTKNTILXNYEG 725
PLYLSTKNTIL Y+G
Sbjct: 206 PLYLSTKNTILKKYDG 221
>01_01_1031 +
8169505-8169553,8169831-8169905,8170395-8170438,
8170633-8170742,8170960-8170997,8171055-8171186,
8171298-8171351,8171424-8171525,8172679-8172764,
8172870-8172973,8173056-8173124,8173156-8173209,
8173210-8173325,8173420-8173454,8173637-8173779,
8174105-8174227,8174305-8174398
Length = 475
Score = 192 bits (469), Expect = 2e-49
Identities = 96/147 (65%), Positives = 106/147 (72%), Gaps = 18/147 (12%)
Frame = +2
Query: 107 GDEMTRIIWDLIKEKLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYNVGIKCA 286
GDEMTR+IW IK+KLI PFLD+++ YDLG+ NRD T D+VTI+ AEA KYNV IKCA
Sbjct: 42 GDEMTRVIWKWIKDKLIFPFLDLDIKYYDLGLPNRDATGDKVTIESAEATLKYNVAIKCA 101
Query: 287 TITP------------------DEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKN 412
TITP DE RV+EF L MWKSPNGTIRNIL GTVFRE IICKN
Sbjct: 102 TITPVLDTQFKFDFGRTIHEPTDEGRVKEFNLSAMWKSPNGTIRNILNGTVFREPIICKN 161
Query: 413 IPRLVTGWDKPIIIGRHAHADQYKATD 493
IPRLV GW KPI IGRHA DQY+ATD
Sbjct: 162 IPRLVPGWIKPICIGRHAFGDQYRATD 188
Score = 40.3 bits (90), Expect = 0.002
Identities = 24/76 (31%), Positives = 34/76 (44%)
Frame = +3
Query: 498 VVPGAGTLEIIFKPESGEAIKHVVHEYKGAXCSXXXXXXXXXXXXXXXXXHFKFALDRKY 677
V+ G G L+++F E I+ V + GA A +++
Sbjct: 190 VIKGPGKLKLVFDGRE-EQIELDVFNFTGAGGVALSMYNTDESIWAFAEASMNMAYQKRW 248
Query: 678 PLYLSTKNTILXNYEG 725
PLYLSTKNTIL Y+G
Sbjct: 249 PLYLSTKNTILKKYDG 264
>04_04_0457 +
25359486-25359571,25360690-25360782,25361561-25361622,
25361758-25361816,25363624-25363733,25364795-25364829,
25365469-25365546,25365952-25366005,25366277-25366362,
25366468-25366571,25366986-25367054,25367135-25367250,
25367387-25367421,25367512-25367654,25367808-25367930,
25368463-25368556
Length = 448
Score = 116 bits (279), Expect = 2e-26
Identities = 53/95 (55%), Positives = 72/95 (75%)
Frame = +2
Query: 146 EKLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYNVGIKCATITPDEKRVEEFK 325
+ LI P+L++++ +DLG+ NRD TDD+VT++ AEA T+T DE RV+EFK
Sbjct: 99 DDLIFPYLELDVKYFDLGLLNRDATDDKVTVESAEATLDLYSNSFFMTLT-DETRVKEFK 157
Query: 326 LKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVT 430
LK MW+SPNGTIRNIL GTVFRE I+CKN+PR+++
Sbjct: 158 LKSMWRSPNGTIRNILNGTVFREPILCKNVPRILS 192
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/67 (32%), Positives = 32/67 (47%)
Frame = +3
Query: 525 IIFKPESGEAIKHVVHEYKGAXCSXXXXXXXXXXXXXXXXXHFKFALDRKYPLYLSTKNT 704
I+ P+ E ++ V+ +KG + AL +K+PLYLSTKNT
Sbjct: 190 ILSVPDGAEPVELNVYNFKGPGVALSMYNVDESIRAFAESS-MAMALSKKWPLYLSTKNT 248
Query: 705 ILXNYEG 725
IL Y+G
Sbjct: 249 ILKKYDG 255
>02_05_0597 +
30245455-30245767,30246693-30246760,30246851-30246939,
30247047-30247212,30247296-30247585,30247692-30247896,
30248013-30248170,30248352-30248595
Length = 510
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = -1
Query: 441 LSHPVTSLGIFLQIIASLKTVPPRILRMVPLGLFH 337
+ H +TSL ++I L+ +PPR+ R V LG+FH
Sbjct: 165 VEHFITSLRDEVRI---LRELPPRVKRRVELGMFH 196
>10_06_0105 -
10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +2
Query: 323 KLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDK 442
K++ W+ P I VFR NIP TGWDK
Sbjct: 69 KMEAFWRVPKWKIEKAKVKVVFRLQFHATNIPS--TGWDK 106
>08_02_0103 - 12400494-12400626,12400882-12400958
Length = 69
Score = 28.7 bits (61), Expect = 5.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 122 WSFHHQGCQQQVQP 81
WS HHQGCQ + P
Sbjct: 12 WSLHHQGCQPRALP 25
>01_06_1168 - 35073599-35073628,35075574-35076993,35077466-35078847
Length = 943
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -3
Query: 514 PAPGTTKVSCFVLISMSMTSND-DGFVPPCYKSRYILANNSLPENSTTKNITDG 356
P P C + ++S+ N+ G++PP S L + +L N I DG
Sbjct: 135 PVPAELFAQCRSIRALSLARNELSGYIPPAVTSCASLVSLNLSSNRLAGPIPDG 188
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,614,138
Number of Sequences: 37544
Number of extensions: 385099
Number of successful extensions: 920
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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