Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2037
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68343-3|CAA92778.1|  412|Caenorhabditis elegans Hypothetical pr...   261   3e-70
Z81479-7|CAB03943.1|  435|Caenorhabditis elegans Hypothetical pr...   230   7e-61
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z82057-2|CAD89759.1|  561|Caenorhabditis elegans Hypothetical pr...    29   4.7  
X75331-1|CAA53080.1|  620|Caenorhabditis elegans acetylcholinest...    29   4.7  
U58731-1|AAB00593.1|  620|Caenorhabditis elegans Abnormal acetyl...    29   4.7  
U40417-9|AAA81417.2|  120|Caenorhabditis elegans Hypothetical pr...    29   4.7  

>Z68343-3|CAA92778.1|  412|Caenorhabditis elegans Hypothetical
           protein F59B8.2 protein.
          Length = 412

 Score =  261 bits (640), Expect = 3e-70
 Identities = 132/208 (63%), Positives = 154/208 (74%), Gaps = 3/208 (1%)
 Frame = +2

Query: 74  KIKAGPVVDILGDEMTRIIWDLIKEKLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEA 253
           KI+ G +V++ GDEMTRIIWDLIKEKLILP++D+ +H +DLG+E+RD TDDQVTID A A
Sbjct: 5   KIQGGDIVEMQGDEMTRIIWDLIKEKLILPYVDLNVHFFDLGIEHRDATDDQVTIDAANA 64

Query: 254 IKKYNVGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTG 433
             KYNV +KCATITPDE RVEEFKLKKMWKSPNGTIRNILGGTVFRE II KN+PRLV  
Sbjct: 65  TLKYNVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIIVKNVPRLVNT 124

Query: 434 WDKPIIIGRHAHADQYKATDFCCPRCWYS*NNLQT*IW*GNKTCSS*V---QGCXV*HWA 604
           W KPIIIGRHAHADQYKATDF  P        ++     G +T    V   +G  V   +
Sbjct: 125 WSKPIIIGRHAHADQYKATDFVVPGAGKL--EIKFVSADGTQTIQETVFDFKGPGV-SLS 181

Query: 605 MFNTDASIIDFAHSSFQVCFGQKIPSVL 688
           M+NTD SI DFAH+SF+    +K P  L
Sbjct: 182 MYNTDDSIRDFAHASFKYALQRKFPLYL 209



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 37/82 (45%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
 Frame = +3

Query: 483 KQLTFVVPGAGTLEIIFKPESG-EAIKHVVHEYKGAXCSXXXXXXXXXXXXXXXXXHFKF 659
           K   FVVPGAG LEI F    G + I+  V ++KG   S                  FK+
Sbjct: 141 KATDFVVPGAGKLEIKFVSADGTQTIQETVFDFKGPGVSLSMYNTDDSIRDFAHAS-FKY 199

Query: 660 ALDRKYPLYLSTKNTILXNYEG 725
           AL RK+PLYLSTKNTIL  Y+G
Sbjct: 200 ALQRKFPLYLSTKNTILKKYDG 221


>Z81479-7|CAB03943.1|  435|Caenorhabditis elegans Hypothetical
           protein C34F6.8 protein.
          Length = 435

 Score =  230 bits (563), Expect = 7e-61
 Identities = 124/210 (59%), Positives = 147/210 (70%), Gaps = 5/210 (2%)
 Frame = +2

Query: 74  KIKA-GPVVDILGDEMTRIIWDLIKEKLILPFLDIELHVYDLGMENRDKTDDQVTIDCAE 250
           KIK   PVVD+ GDEMTRIIW  IK KLILP+LD+++  YDLG+E RD+T+DQVTID A 
Sbjct: 26  KIKVDNPVVDLDGDEMTRIIWKEIKNKLILPYLDLDIKYYDLGLEYRDETNDQVTIDAAH 85

Query: 251 AIKKYNVGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVT 430
           AI +++VGIKCATITPDE R++EF LKKMW SPNGTIRNILGGTVFRE I+CKNIPRLV 
Sbjct: 86  AILEHSVGIKCATITPDEARIKEFNLKKMWLSPNGTIRNILGGTVFREPILCKNIPRLVP 145

Query: 431 GWDKPIIIGRHAHADQYKATDFCCPRCWYS*NNLQT*I--W*GNKTCSS--*VQGCXV*H 598
           GW +PI IGRHA  DQYK TD   P    S + LQ  +    G+K   +    +      
Sbjct: 146 GWTQPITIGRHAFGDQYKCTDLVIP----SGSTLQLLVNKPDGSKDVHNVYDFKKSGGVG 201

Query: 599 WAMFNTDASIIDFAHSSFQVCFGQKIPSVL 688
            AM+NTD SI  FAHS FQ    ++ P  L
Sbjct: 202 LAMYNTDESIKGFAHSCFQYALMKQWPLYL 231



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 28/98 (28%), Positives = 44/98 (44%)
 Frame = +3

Query: 432 GGTNPSSLDVMLMLINTKQLTFVVPGAGTLEIIFKPESGEAIKHVVHEYKGAXCSXXXXX 611
           G T P ++         K    V+P   TL+++     G    H V+++K +        
Sbjct: 146 GWTQPITIGRHAFGDQYKCTDLVIPSGSTLQLLVNKPDGSKDVHNVYDFKKSGGVGLAMY 205

Query: 612 XXXXXXXXXXXXHFKFALDRKYPLYLSTKNTILXNYEG 725
                        F++AL +++PLYLSTKNTIL  Y+G
Sbjct: 206 NTDESIKGFAHSCFQYALMKQWPLYLSTKNTILKKYDG 243


>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
            B0207.5 protein.
          Length = 3279

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = +2

Query: 161  PFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYNVGIKCATITPDEKRVEEFKLKKMW 340
            P +D    V ++    R +   +  +      KK+    +  T+ PDE+ VE  KL K  
Sbjct: 2175 PDVDDSEDVEEIMRRPRKRIGPKEEVVLLSVTKKHPHSYRTKTV-PDEEPVEIVKLVKNR 2233

Query: 341  KSPNGTIRNI 370
            + PN T+R +
Sbjct: 2234 RLPNATLREV 2243


>Z82057-2|CAD89759.1|  561|Caenorhabditis elegans Hypothetical
           protein T26H8.4 protein.
          Length = 561

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = -3

Query: 319 FFNSLLIRSYGRTFDAHIVFLYGLSTINCNLIISLITIFH 200
           F+NSL I S   TF    +F+   STI+ + +I LI IFH
Sbjct: 59  FYNSLSISS---TFP--FIFMTEFSTISTSFLILLIAIFH 93


>X75331-1|CAA53080.1|  620|Caenorhabditis elegans
           acetylcholinesterase protein.
          Length = 620

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -2

Query: 257 LWPQHNQL*LDHQSYH-DFPYPSRRHVIQCPRKEESAF 147
           +WP++N + +++ +   +  YPS + +   PR++E AF
Sbjct: 523 VWPKYNSVSMEYMNMTVESSYPSMKRIGHGPRRKECAF 560


>U58731-1|AAB00593.1|  620|Caenorhabditis elegans Abnormal
           acetylcholinesterase protein1 protein.
          Length = 620

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -2

Query: 257 LWPQHNQL*LDHQSYH-DFPYPSRRHVIQCPRKEESAF 147
           +WP++N + +++ +   +  YPS + +   PR++E AF
Sbjct: 523 VWPKYNSVSMEYMNMTVESSYPSMKRIGHGPRRKECAF 560


>U40417-9|AAA81417.2|  120|Caenorhabditis elegans Hypothetical
           protein T08A9.13 protein.
          Length = 120

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = +2

Query: 200 MENRDKTDDQVTIDCAEAIKKYNVGIKCATITPDEKRVEEFKLKK 334
           ++   + + +  ++C +A+ +Y+V  K  T+T  E++  E   KK
Sbjct: 44  LQKAKELEQRTRVECQQALDQYDVLKKIPTLTEQERKENETLTKK 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,512,366
Number of Sequences: 27780
Number of extensions: 351959
Number of successful extensions: 918
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)