Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2036
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos... 87 2e-18
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 28 1.5
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 28 1.5
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 2.0
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|... 27 3.4
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c... 26 4.5
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 26 6.0
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 25 7.9
>SPAC1635.01 |||voltage-dependent anion-selective
channel|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 87.0 bits (206), Expect = 2e-18
Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 1/186 (0%)
Frame = +2
Query: 80 MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQES-GKVFGSLSS 256
MAPP YA + K ND+ + + G L ++T + +GV F ++ NQ++ G + G L +
Sbjct: 1 MAPPAYAAINKLCNDLLQRDFPVGATLLSVRTTAPNGVVFN--VSGNQDAKGVISGKLET 58
Query: 257 KFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTN 436
F K GLT ++ W T N L + + + ++ A GL + + TF+P T KT L +
Sbjct: 59 SFNDKANGLTISQGWTTANVLESKVGLSEQFAPGLHLNVNTTFSPATAAKTAILNLEHQH 118
Query: 437 DTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALSYQSGDFAL 616
+ + +++ + D + ++G+LAG +D QK S + Y + ++
Sbjct: 119 PLIHTHASVNALERKFLGDF--TVGHEGFLAGAEFGYDVQKGNVSNYAATIGYLASPLSV 176
Query: 617 HTNVDN 634
N
Sbjct: 177 ALQASN 182
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 27.9 bits (59), Expect = 1.5
Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 2/112 (1%)
Frame = +2
Query: 167 LKTKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDK 346
L ++ + SG + + V + + + G ++DN I +
Sbjct: 173 LSIEAGRNAQVESGFSLGESFAHVGNDMQFHLPISNSGAATPRSVHSDNQSQISIEVGRD 232
Query: 347 IAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAV--NTNLDLDLAGPVVDV 496
A L G PQ T F+ ++ T+LD +L PV D+
Sbjct: 233 APAAAATDLSGIIGPQMTKSPASSVTHFSTPSMLPIGGTSLDDELLAPVDDL 284
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 27.9 bits (59), Expect = 1.5
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Frame = +2
Query: 5 YWSRAPICVEFSVK*YQFVNL*NTDMAPPY------YADLGKKANDVFSKGYHFGVFKLD 166
Y APIC EF+ Y F L T + YA G N S YH G D
Sbjct: 284 YSENAPICFEFAK--YGFCEL-GTSCKNQHILQCTDYAMFGSCNNPQCSL-YH-GAVSAD 338
Query: 167 LKTKSESGVEFTSGITSNQESGKVFGSLS 253
+ ++E+ + T+G + ++SG GS S
Sbjct: 339 VPEQTEAPISKTAGSINPEDSGSEIGSNS 367
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +2
Query: 365 VTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDL 469
V++E P+ T +G+++T+F DT+ + L++
Sbjct: 3557 VSIEPLLKPEFFTGSGEVQTTFAKDTITITLPLNI 3591
>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 287
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 176 KSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 325
+S SG S + S + V +L S +K + LTF +W + +AT
Sbjct: 176 RSRSGHTLMSQLKSKGRN--VMATLFSPLFIKAFALTFVSEWGDRSQIAT 223
>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 433
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 223 LVGGDSAGEFNTRLALGLQVEFENTKVIALAEDIIG 116
L GG G+F++ L G++ ++ T+ AE +IG
Sbjct: 72 LAGGRGKGQFDSGLRGGVRPVYDATEARMFAEQMIG 107
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +3
Query: 174 PRASLVLNSP---AESPPTRKAERFLAAFPPNLQ 266
P L + P + P T+KA +FPPNLQ
Sbjct: 378 PNTKLSITIPEAGSTDPETQKARAAFESFPPNLQ 411
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 7.9
Identities = 21/69 (30%), Positives = 32/69 (46%)
Frame = -2
Query: 690 RSPACQIPXGRLNRRKSLPLSTFVWRAKSPDW*LRAKLFLENFAFCVSNWVCTPASQPW* 511
RSP + +L+ R+ LPLS F +W L + N + V+N+V S+
Sbjct: 187 RSPIAPLTEDQLSAREELPLSHF----SHIEWNLHLR---SNKSIVVNNFVGQLCSRTQC 239
Query: 510 FSTAATSTT 484
+ TSTT
Sbjct: 240 MTCGRTSTT 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,538
Number of Sequences: 5004
Number of extensions: 56669
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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