Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2033
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    29   0.94 
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    27   2.2  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    27   3.8  
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...    27   3.8  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    27   3.8  
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun...    25   8.7  

>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +3

Query: 153 NTDISTKLENSRNTLRKIARNDGAEFSKQSILNDMEKFVKMVNTMDETVLVPSRLMNLPQ 332
           N  + T LEN  N  R I  N    +  Q    D+ K +++   MDE   V ++  N+P 
Sbjct: 475 NISVITLLENKENGSRLIVANCHIHWDPQ--FRDV-KVIQVAMLMDEIAQVATKFRNMPS 531

Query: 333 EGDDD 347
           +   D
Sbjct: 532 KIPSD 536


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -3

Query: 253 SFRMLCFENSAPSLRAILRRVFLLFSNFVDMSVLKDIFWCYLTTLNI 113
           +F +  F+N   SLR+IL R   L  +FV   V   +F  ++ TLNI
Sbjct: 221 AFNLFSFKNKFSSLRSILFRSEGL--SFVQFLVCIAVFATFMYTLNI 265


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -3

Query: 451 RSDTRLPRSTXSWLSPPDHSNSVFRSLSMENMLNGSSSPSCGKFIRRLGTKT 296
           R +T+LPR    + +PP HS +V   L+ +    G  S   G+ I     KT
Sbjct: 3   RLNTQLPRM---YSAPPGHSKAVSTELNKDLSSVGGRSAKLGQVIHHCFYKT 51


>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 248 E*HGEICQNG*HHG*DGLSTKSSDEF 325
           E HGE+C    H G D + TK+ +++
Sbjct: 163 EEHGEVCPANWHKGSDTIDTKNPEKY 188


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 141 KMSFNTDISTKLENSRNTLRKIARNDGAEFSKQSILNDMEK 263
           K +  + IST  +  R T     RNDG + +     ND EK
Sbjct: 239 KRNVVSPISTHTKKRRRTANTSQRNDGLDLNTVFTTNDWEK 279


>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
           Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 190 TPCAKSPVMMVLNFQNRAS*MTWRNLSKWL 279
           +PC   PV  + +  +R + +T   L KWL
Sbjct: 271 SPCGNCPVSDICDANSRVNPITCEYLDKWL 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,895
Number of Sequences: 5004
Number of extensions: 50134
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)