Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2033
         (750 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001691-1|AAN71446.1|  279|Drosophila melanogaster RE58929p pro...    79   8e-15
AE013599-3997|AAF47303.1|  279|Drosophila melanogaster CG2765-PA...    79   8e-15
AE014296-2198|AAF49875.3| 1988|Drosophila melanogaster CG11008-P...    29   5.1  
AY122171-1|AAM52683.1| 1653|Drosophila melanogaster LD29171p pro...    29   8.9  
AE014134-2399|AAN10848.1| 1614|Drosophila melanogaster CG7578-PB...    29   8.9  
AE014134-2398|AAF53331.2| 1653|Drosophila melanogaster CG7578-PA...    29   8.9  

>BT001691-1|AAN71446.1|  279|Drosophila melanogaster RE58929p
           protein.
          Length = 279

 Score = 78.6 bits (185), Expect = 8e-15
 Identities = 43/66 (65%), Positives = 51/66 (77%)
 Frame = +3

Query: 144 MSFNTDISTKLENSRNTLRKIARNDGAEFSKQSILNDMEKFVKMVNTMDETVLVPSRLMN 323
           MS  TD+ TKLE SRN LR+IAR+D  +FSK SI+N MEKFVK VN MD+T+LVP RLM+
Sbjct: 1   MSGYTDL-TKLETSRNCLRRIARHDEQQFSKDSIVNVMEKFVKTVNIMDDTILVPCRLMD 59

Query: 324 LPQEGD 341
             Q GD
Sbjct: 60  -RQIGD 64


>AE013599-3997|AAF47303.1|  279|Drosophila melanogaster CG2765-PA
           protein.
          Length = 279

 Score = 78.6 bits (185), Expect = 8e-15
 Identities = 43/66 (65%), Positives = 51/66 (77%)
 Frame = +3

Query: 144 MSFNTDISTKLENSRNTLRKIARNDGAEFSKQSILNDMEKFVKMVNTMDETVLVPSRLMN 323
           MS  TD+ TKLE SRN LR+IAR+D  +FSK SI+N MEKFVK VN MD+T+LVP RLM+
Sbjct: 1   MSGYTDL-TKLETSRNCLRRIARHDEQQFSKDSIVNVMEKFVKTVNIMDDTILVPCRLMD 59

Query: 324 LPQEGD 341
             Q GD
Sbjct: 60  -RQIGD 64


>AE014296-2198|AAF49875.3| 1988|Drosophila melanogaster CG11008-PA
            protein.
          Length = 1988

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 14/62 (22%), Positives = 28/62 (45%)
 Frame = +3

Query: 138  QKMSFNTDISTKLENSRNTLRKIARNDGAEFSKQSILNDMEKFVKMVNTMDETVLVPSRL 317
            QK+    D+S K + +R +LR    N+      + ++N +       + M++ V  P+  
Sbjct: 1541 QKLDDVPDVSVKSKGTRKSLRASLNNEVPAIQPEPVINTVSSSENSTSKMEDVVTEPNDT 1600

Query: 318  MN 323
             N
Sbjct: 1601 KN 1602


>AY122171-1|AAM52683.1| 1653|Drosophila melanogaster LD29171p protein.
          Length = 1653

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -3

Query: 262  FSMSFRMLCFENSAPSLRAILRRVFL 185
            +S+   M+CF+   P LR++LRRVF+
Sbjct: 1617 YSLLCEMMCFDLK-PELRSVLRRVFM 1641


>AE014134-2399|AAN10848.1| 1614|Drosophila melanogaster CG7578-PB,
            isoform B protein.
          Length = 1614

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -3

Query: 262  FSMSFRMLCFENSAPSLRAILRRVFL 185
            +S+   M+CF+   P LR++LRRVF+
Sbjct: 1578 YSLLCEMMCFDLK-PELRSVLRRVFM 1602


>AE014134-2398|AAF53331.2| 1653|Drosophila melanogaster CG7578-PA,
            isoform A protein.
          Length = 1653

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -3

Query: 262  FSMSFRMLCFENSAPSLRAILRRVFL 185
            +S+   M+CF+   P LR++LRRVF+
Sbjct: 1617 YSLLCEMMCFDLK-PELRSVLRRVFM 1641


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,255,672
Number of Sequences: 53049
Number of extensions: 590300
Number of successful extensions: 1284
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3417159966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)