Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2029
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0805 + 21400345-21400701,21400797-21400975,21401223-214012...    60   2e-09
02_04_0592 - 24171698-24172285                                         50   2e-06
07_01_1023 + 8840754-8842988,8843189-8843362                           31   0.67 
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636...    31   0.67 
08_02_1423 + 26975466-26975508,26976253-26976365,26976505-269765...    29   2.7  
05_01_0463 - 3666626-3666933,3667060-3667258,3667388-3667629,366...    29   4.7  
05_03_0633 + 16416913-16417009,16417976-16418060,16418398-164185...    28   8.2  

>08_02_0805 +
           21400345-21400701,21400797-21400975,21401223-21401271,
           21401310-21401390,21401988-21402605
          Length = 427

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
 Frame = +3

Query: 39  LKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD-VVKVKNVHIIDGVKKY 212
           +K V N +L  Y G WYEI+ FP+  + ++G  + A Y L GD  VKV N    DG + +
Sbjct: 1   MKVVRNLDLERYMGRWYEIACFPSRFQPRDGTNTRATYTLAGDGAVKVLNETWTDGRRGH 60

Query: 213 IEGTAKLTDDANKAAKLTVTF 275
           IEGTA   D  +  AKL V F
Sbjct: 61  IEGTAYRADPVSDEAKLKVKF 81


>02_04_0592 - 24171698-24172285
          Length = 195

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
 Frame = +3

Query: 6   AEVIHEGTCPELKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKL--EGDVVKV 176
           A  + + +  E+  V   ++  Y G WYEI+  PN  + ++G+ + A Y L  +G  V V
Sbjct: 3   AAAVEKKSGSEMTVVRGLDVARYMGRWYEIASLPNFFQPRDGRDTRATYALRPDGATVDV 62

Query: 177 KN-VHIIDGVKKYIEGTAKLTDDANKAAKLTVTF 275
            N      G + YI+GTA   D A+  AKL V F
Sbjct: 63  LNETWTSSGKRDYIKGTAYKADPASDEAKLKVKF 96


>07_01_1023 + 8840754-8842988,8843189-8843362
          Length = 802

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 21  EGTCPELKP-VNNFNLTAYQGIW-YEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHII 194
           EG C +    + + NL    G+W +++S   N S K G C  A      D++  KN+ I+
Sbjct: 288 EGLCEDANDTIPSTNLMITAGVWGHDVS---NYSAKEGLCEEAN-----DIIPRKNLTIV 339

Query: 195 DGV 203
           DGV
Sbjct: 340 DGV 342


>04_03_0673 -
           18562497-18563010,18563080-18563471,18563553-18563649,
           18563977-18564149,18564349-18564485,18564806-18564872
          Length = 459

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 48  VNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGD 164
           V NFN+  + G WY IS   N +     C   E+++EGD
Sbjct: 202 VKNFNMADFNGKWY-ISSGLNPTFDTFDCQLHEFRVEGD 239


>08_02_1423 +
           26975466-26975508,26976253-26976365,26976505-26976561,
           26976607-26976801,26976912-26977060,26977145-26977307,
           26977865-26977957,26978075-26978158,26978865-26979004,
           26979093-26979192
          Length = 378

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +3

Query: 102 FPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTA-KLTDDANKAAKLTVTFK 278
           F   S   G     EY+ E  V    +V   +G+KK ++G A K  +D+     L     
Sbjct: 209 FAEPSGTEGTEEEGEYEDESIVHHTASVGDDEGLKKALDGGADKDEEDSEGRRALHFACG 268

Query: 279 FGEISRDGSVQI 314
           +GE+S D ++ +
Sbjct: 269 YGEVSNDKNISL 280


>05_01_0463 -
           3666626-3666933,3667060-3667258,3667388-3667629,
           3667823-3669035
          Length = 653

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 351 NCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDN 452
           +CK D     H  +  +   N+ LEGD ++ +DN
Sbjct: 556 SCKQDTSDDDHAAYFPVQVANELLEGDVRSLLDN 589


>05_03_0633 +
           16416913-16417009,16417976-16418060,16418398-16418551,
           16418808-16419023,16419105-16419241,16419317-16419408,
           16419622-16419804,16421722-16421819,16422021-16422070,
           16424605-16424756,16424944-16425069,16426315-16426523
          Length = 532

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
 Frame = +3

Query: 153 LEGDVVKVKNVHII-DGVKKYIEG-TAKLTDDANKAAKLTVTF-KFGEISRDGSVQILAT 323
           ++G +  V + H+I DG    + G  A +   AN AA++ +   + G+ ++D +  I   
Sbjct: 67  IDGFIAVVAHTHVIHDGA---VTGKAADVLAAANTAAEVALRLVRPGKKNKDVTEAI--- 120

Query: 324 DYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKL--EGDAKTAVDN 452
                A AY+CK  +   SHQ+  +++  NK +    +A T VD+
Sbjct: 121 --QKVAAAYDCKIVEGVLSHQLKQFVIDGNKVVLSVSNADTKVDD 163


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,592,756
Number of Sequences: 37544
Number of extensions: 307775
Number of successful extensions: 896
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)