Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2028
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    27   2.5  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   3.3  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    25   5.8  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    25   7.6  

>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 286 MIDIVKLFFFH-NTFLKTIIRLSCSMYIVFYFEYF 387
           ++ +V L   H  ++ K II LSCS  + F+FE F
Sbjct: 398 LVSLVALLRSHVRSYKKIIIFLSCSDSVDFHFEAF 432


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 316 HNTFLKTIIRLSCSMYIVFYFEYFFLVN 399
           H TFL  +  LS  + I FY  +++L N
Sbjct: 442 HRTFLLFVFTLSTLIPIYFYVAFYYLQN 469


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 502 LLHKCDMLFYVLKTTYGNTMLQYKTKCTSQ 413
           L+  C +LF  +KTT+G     Y  K  +Q
Sbjct: 224 LVTNCSLLFEAIKTTFGLEKDSYVVKAGNQ 253


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -2

Query: 487 DMLFYVLKTTYGNTMLQYKTKCTSQTKASYLLKKNIQNKIQYTSNNLDELLFLGMYY-EK 311
           ++L  +LK    +T  Q K KC  +T+ +  ++K   N  +  S+    L+ L  ++   
Sbjct: 265 NILQEILKIESTSTTSQIKPKCNYETEITDCMEKLQSNLSELKSSRKSSLISLKSFWLSF 324

Query: 310 KKVSL 296
            KVSL
Sbjct: 325 YKVSL 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,856
Number of Sequences: 5004
Number of extensions: 40754
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)