Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2028
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1615 + 34793511-34793660,34794013-34794070,34794163-347944...    30   1.5  
02_05_0435 - 28958422-28958665,28959328-28959462,28960056-289602...    27   7.7  

>04_04_1615 +
           34793511-34793660,34794013-34794070,34794163-34794410,
           34794485-34794601,34795309-34795369,34795860-34795954,
           34796048-34796122,34796316-34796401,34796529-34796578,
           34796667-34796707,34796784-34796948,34797204-34797271,
           34797362-34797422,34797878-34798393
          Length = 596

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +3

Query: 381 IFFFSKYDALVWLVHFVLY 437
           +F+F K + L+WL+HF+L+
Sbjct: 363 LFWFKKPEFLLWLIHFILF 381


>02_05_0435 -
           28958422-28958665,28959328-28959462,28960056-28960211,
           28960287-28961092,28961177-28961254,28961809-28961883,
           28962127-28962215,28962735-28962843,28963007-28963086,
           28963739-28963794,28963876-28963958,28964049-28964118,
           28964200-28964309,28964395-28964548,28965183-28965382,
           28966175-28966348,28969080-28969277,28970564-28970791
          Length = 1014

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
 Frame = -2

Query: 529 NINRCIYVTL--LHKCDMLFYVLKTTYGNTMLQYKTKCTSQTKASYLLKKNIQNKIQYTS 356
           N +  +YV L  ++K     YV+K   G        KC      SY+  K I+N+  +  
Sbjct: 248 NSDLILYVNLELVNKKSDRRYVIKEMLGQGTFGQVAKCWDGETNSYVAVKVIKNQPAFYQ 307

Query: 355 NNLDELLFLGMYYEK 311
             + E+  L M  EK
Sbjct: 308 QAIMEVSLLSMLNEK 322


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,388,963
Number of Sequences: 37544
Number of extensions: 194107
Number of successful extensions: 355
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)