Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2028
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032657-16|CAJ85780.1|  318|Caenorhabditis elegans Hypothetical...    35   0.035
AL032657-15|CAA21734.1|  788|Caenorhabditis elegans Hypothetical...    35   0.035
AC084197-8|AAG23476.1|  228|Caenorhabditis elegans Hypothetical ...    34   0.061
Z69663-4|CAA93508.1|  287|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z70038-4|CAA93881.1|  427|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AL110477-7|CAB54332.1|  158|Caenorhabditis elegans Hypothetical ...    28   4.0  
Z36949-2|CAA85416.1|  184|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z93393-9|CAB07695.1|  190|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AY357729-1|AAQ84518.1|  329|Caenorhabditis elegans two-pore K+ c...    27   9.2  
AF083652-1|AAC32863.1|  329|Caenorhabditis elegans putative pota...    27   9.2  
AF025454-3|AAC71151.2|  329|Caenorhabditis elegans Suppressor pr...    27   9.2  
AF016414-6|AAG24022.1|  323|Caenorhabditis elegans Serpentine re...    27   9.2  

>AL032657-16|CAJ85780.1|  318|Caenorhabditis elegans Hypothetical
           protein Y47H9C.5b protein.
          Length = 318

 Score = 35.1 bits (77), Expect = 0.035
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 303 FHYINHRWRSIKNISLPTYQILESTIIKAGRQCDF-WTIIGKSEK*IIDFVFHW 145
           + Y NH WR+  +I    Y  L + ++  G   DF  T++  SE  I+DF   W
Sbjct: 177 YDYPNHMWRNSDSIQRWVYNFLPTEVVSLGN--DFHTTVLDSSEPWIVDFFAPW 228


>AL032657-15|CAA21734.1|  788|Caenorhabditis elegans Hypothetical
           protein Y47H9C.5a protein.
          Length = 788

 Score = 35.1 bits (77), Expect = 0.035
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 303 FHYINHRWRSIKNISLPTYQILESTIIKAGRQCDF-WTIIGKSEK*IIDFVFHW 145
           + Y NH WR+  +I    Y  L + ++  G   DF  T++  SE  I+DF   W
Sbjct: 647 YDYPNHMWRNSDSIQRWVYNFLPTEVVSLGN--DFHTTVLDSSEPWIVDFFAPW 698


>AC084197-8|AAG23476.1|  228|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.12 protein.
          Length = 228

 Score = 34.3 bits (75), Expect = 0.061
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 297 YINHRWRSIKNISLPTYQILESTIIKAGRQCDF-WTIIGKSEK*IIDFVFHW 145
           Y NH WR+  +I    Y  L + ++  G   DF  T++  SE  I+DF   W
Sbjct: 89  YPNHMWRNSDSIQRWVYNFLPTEVVSLGN--DFHTTVLDSSEPWIVDFFAPW 138


>Z69663-4|CAA93508.1|  287|Caenorhabditis elegans Hypothetical
           protein K02B9.3a protein.
          Length = 287

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 286 MIDIVKLFFFHNTFLKTIIRLSCS--MYIVFYFEYFFLVNTML 408
           +I  +  F F  T L  ++ + C+   Y+     YFFL+NT++
Sbjct: 10  LISFMDTFGFIATLLYLMVAIKCNGIFYVPHLVRYFFLINTLI 52


>Z70038-4|CAA93881.1|  427|Caenorhabditis elegans Hypothetical
           protein ZK1067.5 protein.
          Length = 427

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 286 MIDIVKLFFFH-NTFLKTIIRLSCSMYIVFYFEYFFLVNTML 408
           ++ +V    +H NT+L   I   CS+ IV ++ +FFL++  L
Sbjct: 84  VVCVVSHMLYHTNTYLFQYISKYCSVSIVSHYFHFFLISCFL 125


>AL110477-7|CAB54332.1|  158|Caenorhabditis elegans Hypothetical
           protein Y113G7B.11 protein.
          Length = 158

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -2

Query: 472 VLKTTYGNTMLQYKTKCTSQTKASYLLKKNIQNKIQYTSNNLDELLFLGMY 320
           VLK   G++  QY T+CTSQ+    +  KN   +     N++ ++    MY
Sbjct: 24  VLKCLSGHS--QYATQCTSQSYCVSITSKNGPVQRSCDGNSISQISLCSMY 72


>Z36949-2|CAA85416.1|  184|Caenorhabditis elegans Hypothetical
           protein F59E10.3 protein.
          Length = 184

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -2

Query: 508 VTLLHKC--DMLFYVLKTTYGNTMLQYKTKCTSQTKASYLLKKNIQNK 371
           VT L++   D+ FYVL +T  N +    T        S +L+KN++ K
Sbjct: 68  VTCLYRSNVDLYFYVLGSTRENELFLDATLTCLYDAVSVVLRKNVEKK 115


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical
           protein F40H6.5 protein.
          Length = 1288

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = -2

Query: 469 LKTTYGNTMLQYKTKCTSQTKASY-LLKKNIQNKIQYTSNNLDELLFLGMYYEKKKVSLY 293
           ++  Y NT L+Y  KC S  + +Y  L K + N  +      D +   G  ++    S +
Sbjct: 738 VQMNYQNTNLKYLPKCISIFQKNYGDLNKRMVNFARIMEVG-DNITITGHIWQNASESTF 796

Query: 292 QS*MAFN*KYIFTYVS 245
              +  + KY+ +Y+S
Sbjct: 797 NLYVGMDPKYLQSYIS 812


>Z93393-9|CAB07695.1|  190|Caenorhabditis elegans Hypothetical
           protein Y48E1B.11 protein.
          Length = 190

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 8/33 (24%), Positives = 23/33 (69%)
 Frame = -2

Query: 454 GNTMLQYKTKCTSQTKASYLLKKNIQNKIQYTS 356
           G+   ++K +C S+  +  ++K+N++ +++YT+
Sbjct: 141 GHIWGRFKVRCVSRRGSVLVVKRNVRVRVEYTT 173


>AY357729-1|AAQ84518.1|  329|Caenorhabditis elegans two-pore K+
           channel protein.
          Length = 329

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = -3

Query: 321 IMKKKKFHYINHRWRSIKNISLPTYQILESTIIKA 217
           I+++K    +  + ++  N+S   Y+ILE+TI+K+
Sbjct: 35  ILQRKLVQRVREKLKTKYNMSNADYEILEATIVKS 69


>AF083652-1|AAC32863.1|  329|Caenorhabditis elegans putative
           potassium channel subunitn2P38 protein.
          Length = 329

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = -3

Query: 321 IMKKKKFHYINHRWRSIKNISLPTYQILESTIIKA 217
           I+++K    +  + ++  N+S   Y+ILE+TI+K+
Sbjct: 35  ILQRKLVQRVREKLKTKYNMSNADYEILEATIVKS 69


>AF025454-3|AAC71151.2|  329|Caenorhabditis elegans Suppressor
           protein 9 protein.
          Length = 329

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = -3

Query: 321 IMKKKKFHYINHRWRSIKNISLPTYQILESTIIKA 217
           I+++K    +  + ++  N+S   Y+ILE+TI+K+
Sbjct: 35  ILQRKLVQRVREKLKTKYNMSNADYEILEATIVKS 69


>AF016414-6|AAG24022.1|  323|Caenorhabditis elegans Serpentine
           receptor, class h protein211 protein.
          Length = 323

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 277 TPSMIDIVKLFFFHNTFLKTIIRLSCSMYIVFYF 378
           TPS +  VK F FH  F   I+ +S +  +  YF
Sbjct: 42  TPSRMGNVKWFMFHVHFWSAILDVSFTFLVTPYF 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,352,180
Number of Sequences: 27780
Number of extensions: 223886
Number of successful extensions: 522
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)