Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2026
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    99   8e-22
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    79   9e-16
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    27   2.9  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    26   5.0  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   6.6  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    26   6.6  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.7  

>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 98.7 bits (235), Expect = 8e-22
 Identities = 63/180 (35%), Positives = 88/180 (48%)
 Frame = +3

Query: 162 LHAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIV 341
           L +E ++ LP  V+RRI  LR LQK + D+E++F  E+                 R+ +V
Sbjct: 63  LTSEGVSELPEAVQRRISGLRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKRRSEVV 122

Query: 342 NGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFW 521
            G  EP ++E         ++ E A   +    T  E KK +         + KGIP+FW
Sbjct: 123 RGADEPTEEEI--------KKGEAADENEKKEPTSSESKKQEGG------DDTKGIPEFW 168

Query: 522 YNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTNTVLTKEY 701
               +NV  LSEM+   DE  L  L DI++   E P  F LEF FA N +FTN +LTK Y
Sbjct: 169 LTAMKNVLSLSEMITPEDEGALSHLVDIRISYMEKP-GFKLEFEFAENPFFTNKILTKTY 227


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 78.6 bits (185), Expect = 9e-16
 Identities = 71/215 (33%), Positives = 97/215 (45%), Gaps = 9/215 (4%)
 Frame = +3

Query: 117 SGVTRNE--MIAAITNRLHAEA------MASLPPNVRRRIRALRTLQKEFVDIEAKFYSE 272
           SG+ RN   M++ I  RL +        + SL P V+ RI AL+ LQK+   I+ +F  +
Sbjct: 56  SGLLRNNPAMLSMIEGRLSSLVGKSSGYIESLAPAVQNRITALKGLQKDCDAIQYEFRQK 115

Query: 273 VHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGE 452
           +                 RA I+ G  EP DDE       D EEE      QN       
Sbjct: 116 MLDLETKYEKKYQPIFSRRAEIIKGVSEPVDDEL------DHEEE----IFQNNL----- 160

Query: 453 EKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIK-VQMHEDP 629
                        P+ KGIP+FW     NV ++ EM+   DE +L+ L DI+   +  D 
Sbjct: 161 -------------PDPKGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIRFTNLSGDV 207

Query: 630 ISFTLEFYFAPNEYFTNTVLTKEYLMKCKPDEXSP 734
             + LEF F  N+YFTN +LTK Y  K   D+ SP
Sbjct: 208 HGYKLEFEFDSNDYFTNKILTKTYYYK---DDLSP 239


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = -3

Query: 685 TVFV---KYSFGAK*-NSKVKLMGSSCICTLISCKH 590
           T+FV   KYSF +K   SK K    SC   LISC H
Sbjct: 354 TLFVSLRKYSFSSKNVQSKEKSKIMSCFTLLISCAH 389


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 426 QNAAITEGEEKKDDKAIEPPMDPNVKGIP 512
           +N+ + E EEK D +AIE   + +V G P
Sbjct: 554 KNSLVNEAEEKNDLEAIEAAKNFHVNGKP 582


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 105  HLLKSGVTRNEMIAAITNRLHAEAMASLP 191
            HLL++  T +E  AA   +LH + + S P
Sbjct: 1596 HLLRNSATNDETKAAFVYQLHKQGILSEP 1624


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
 Frame = -2

Query: 500 YIGIH-WRLNSLVILLFLTLSDGSI---LYRPS*LFFFSVITPWVETFIIIRFIC 348
           Y G+  + + ++ ILLF ++  G++   L++P  +   SV T W+ + I + F+C
Sbjct: 659 YTGLDSYNIFAVGILLFTSVFAGALWWCLHQPKRMMDRSVKTFWIMSSISLTFLC 713


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 402 EEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGI 509
           EEEL+ ++ N    + E++KD+   +P   P++  +
Sbjct: 475 EEELSDSLSNDFGIDAEKEKDENLSKPEHHPSITSV 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,864,177
Number of Sequences: 5004
Number of extensions: 56860
Number of successful extensions: 192
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)