Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2025
(800 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 328 4e-91
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 175 8e-45
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 169 3e-43
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 107 2e-24
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 89 9e-19
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 84 3e-17
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 82 1e-16
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 47 4e-06
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 29 1.0
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 27 2.3
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 3.1
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 27 3.1
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 5.4
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 7.2
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 25 9.5
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 25 9.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 328 bits (807), Expect = 4e-91
Identities = 159/208 (76%), Positives = 169/208 (81%)
Frame = +3
Query: 87 DEXVAALVVDNGSGMCKAGFAXDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQXK 266
+E +AALV+DNGSGMCKAGFA DDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQ K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 267 RGILTLKYPIEHGIVTNWDDMXKIWHHTFYNELRVXPXEHPXLLTXAPLNPXANRXKMTQ 446
RGILTLKYPIEHGIV NWDDM KIWHHTFYNELRV P EHP LLT APLNP +NR KMTQ
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 447 IMFETFNTPAMYVAIQAVLSLYAXGRTTGIVLDSGGRCLPHRAHLRXIRTPPRHPGVWT* 626
I+FETFN PA YVAIQAVLSLYA GRTTGIVLDSG + H + P
Sbjct: 122 IIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDG-VTHTVPIYEGYALPHAIMRLDL 180
Query: 627 PGRDLTDYLMKILTERGYSFTTTGEREI 710
GRDLTDYLMKIL ERGY+F+TT EREI
Sbjct: 181 AGRDLTDYLMKILMERGYTFSTTAEREI 208
Score = 33.1 bits (72), Expect = 0.047
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = +2
Query: 728 EXLXYVALDFXQEMGTAASSSS 793
E L YVALDF QE+ TAA SSS
Sbjct: 214 EKLCYVALDFEQELQTAAQSSS 235
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 175 bits (425), Expect = 8e-45
Identities = 89/203 (43%), Positives = 123/203 (60%), Gaps = 1/203 (0%)
Frame = +3
Query: 105 LVVDNGSGMCKAGFAXDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQXKRGILTL 284
+ +DNGSG KAGFA DD P+ +FP+ VGR +H+ VM QKD +VG EAQ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 285 KYPIEHGIVTNWDDMXKIWHHTFYN-ELRVXPXEHPXLLTXAPLNPXANRXKMTQIMFET 461
+ PIE GI+ NW DM +IW + + + +L P EHP LLT PL N+ K+ + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 462 FNTPAMYVAIQAVLSLYAXGRTTGIVLDSGGRCLPHRAHLRXIRTPPRHPGVWT*PGRDL 641
N PA+ ++Q VL+LYA RTTGIVL+ G L H + + P GRD+
Sbjct: 132 LNVPALSFSLQPVLALYASARTTGIVLECGDG-LTHSVPIYDGFSIPSAIQQEEIGGRDV 190
Query: 642 TDYLMKILTERGYSFTTTGEREI 710
TDYL L + G+ ++ E+EI
Sbjct: 191 TDYLQLQLRKSGHELVSSAEKEI 213
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 169 bits (412), Expect = 3e-43
Identities = 88/205 (42%), Positives = 127/205 (61%), Gaps = 2/205 (0%)
Frame = +3
Query: 99 AALVVDNGSGMCKAGFAXDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQXKRG 272
A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA+ R
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRS 63
Query: 273 ILTLKYPIEHGIVTNWDDMXKIWHHTFYNELRVXPXEHPXLLTXAPLNPXANRXKMTQIM 452
+L +KYP+E+GI+ ++++M ++W +TF+ +L++ P LLT P+NP ANR KM + M
Sbjct: 64 LLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETM 123
Query: 453 FETFNTPAMYVAIQAVLSLYAXGRTTGIVLDSGGRCLPHRAHLRXIRTPPRHPGVWT*PG 632
FE + +YVAIQAVLSLYA G ++G+V+DSG + H + G G
Sbjct: 124 FERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDG-VTHIVPVYESVVLNHLVGRLDVAG 182
Query: 633 RDLTDYLMKILTERGYSFTTTGERE 707
RD T YL+ +L +GY+F T + E
Sbjct: 183 RDATRYLISLLLRKGYAFNRTADFE 207
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 107 bits (257), Expect = 2e-24
Identities = 66/181 (36%), Positives = 93/181 (51%), Gaps = 32/181 (17%)
Frame = +3
Query: 105 LVVDNGSGMCKAGFAXDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 233
+++DNG+G K G+A +DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 234 ------DSYVGDEAQXKRGI-LTLKYPIEHGIVTNWDDMXKIWHHTFYNELRVXPXEHPX 392
D ++G++A K +L YPI HG + NWD M + W + + LR P +H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 393 LLTXAPLNPXANRXKMTQIMFETFNTPAMYVAIQAVLSLYAXGRT--------TGIVLDS 548
LLT PLNP NR +IMFE+FN +Y+A+QAVL+L A + TG V+DS
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDS 186
Query: 549 G 551
G
Sbjct: 187 G 187
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 88.6 bits (210), Expect = 9e-19
Identities = 50/154 (32%), Positives = 78/154 (50%)
Frame = +3
Query: 90 EXVAALVVDNGSGMCKAGFAXDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQXKR 269
+ V+A+V+D GS + GF+ +D P+ V PS G + G + Y+ +
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 270 GILTLKYPIEHGIVTNWDDMXKIWHHTFYNELRVXPXEHPXLLTXAPLNPXANRXKMTQI 449
G + +K I +G V NWD +W + +L+ P EHP L+T NP NR K +
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 450 MFETFNTPAMYVAIQAVLSLYAXGRTTGIVLDSG 551
MFE+ PA Y+A Q + +A G+ T ++D G
Sbjct: 121 MFESLRCPATYLAKQETCAAFASGKGTACLVDIG 154
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 83.8 bits (198), Expect = 3e-17
Identities = 47/152 (30%), Positives = 84/152 (55%), Gaps = 3/152 (1%)
Frame = +3
Query: 105 LVVDNGSGMCKAGFAXDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQXKRGILTL 284
LV+DNGS +AG+ + P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82
Query: 285 -KYPIEHGIVTNWDDMXKIWHHTFYNELRVXPXEHPXLLTXAPLNPXANRXKMTQIMFET 461
+ P E +++NWD M ++ +TF +L + EHP +T NP R MT+++FE
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141
Query: 462 FNTPAMYVAIQAVLSLYAXGR--TTGIVLDSG 551
+N P++ I + S Y + ++GIVL+ G
Sbjct: 142 YNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLG 173
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 81.8 bits (193), Expect = 1e-16
Identities = 44/156 (28%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Frame = +3
Query: 90 EXVAALVVDNGSGMCKAGFAXDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQXKR 269
E + +LV+D GS + G+A +++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 270 GI--LTLKYPIEHGIVTNWDDMXKIWHHTFYNELRVXPXEHPXLLTXAPLNPXANRXKMT 443
I + +K +GI+ +W+ W +L+V P E+ ++T NP + R ++
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIM 121
Query: 444 QIMFETFNTPAMYVAIQAVLSLYAXGRTTGIVLDSG 551
+ FE + PA Y+ QAV +A ++T +++D G
Sbjct: 122 EAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIG 157
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 46.8 bits (106), Expect = 4e-06
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Frame = +3
Query: 291 PIEHGIVTNWDDMXKIWHHTFYNELRVXPXE----HPXLLTXAPLNPXANRXKMTQIMFE 458
PI+ G V +W+ + W H Y+ L P + +P L +R TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 459 TFNTPAMYVAIQAVLSLYAXGRTTGIVLDSG 551
P +A + ++ LYA G G+V+D G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIG 202
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 28.7 bits (61), Expect = 1.0
Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 4/146 (2%)
Frame = +3
Query: 105 LVVDNGSGMCKAGFAXDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQXKRGILTL 284
+V+DNG+ KAGFA P+ + R + G + ++G+E TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 285 KYPIEH--GIVTNWDDMXKIWHHTFYNELRVXP--XEHPXLLTXAPLNPXANRXKMTQIM 452
++ H G + +W +W N + P ++ LLT + Q++
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLV 117
Query: 453 FETFNTPAMYVAIQAVLSLYAXGRTT 530
FE F A A L + G T
Sbjct: 118 FEEFQFDAYLPCTPAELIPWDHGSFT 143
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = -1
Query: 785 WKQRCPFPAXSQERRSXXFPLMSRPNFPLAGGSERVAALGEDLHEVVCEVATGLSPD 615
WK+ S+ + +P++ RP++ L+G + V L + + E A+ +SPD
Sbjct: 761 WKELTSVAEASKFANAVGYPVLVRPSYVLSGAAMSVIRDESSLKDKL-ENASAVSPD 816
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 162 PRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQXKRGILTLKYP 293
PRA F ++ P H G+++ M KD G+E +G + + P
Sbjct: 506 PRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/57 (22%), Positives = 27/57 (47%)
Frame = -1
Query: 785 WKQRCPFPAXSQERRSXXFPLMSRPNFPLAGGSERVAALGEDLHEVVCEVATGLSPD 615
WK+ F + + +P++ RP++ L+G + DLH + + A ++ D
Sbjct: 1146 WKELTSFDEADKFCDTVGYPVLVRPSYVLSGAAMNTVYSQSDLHSYL-QQAVAINKD 1201
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Frame = +3
Query: 483 VAIQAVLSLYAXGRTTGIVLDSGGR-----CLP-HRAHLRXIRTPP 602
+ ++ VL +Y ++GI++ GG+ LP HR +++ + T P
Sbjct: 1075 IGLETVLDIYEQESSSGIIIAMGGQTANNIALPLHRENVKILGTSP 1120
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 258 VPHLLHKSPSVPYRPSRPDGGA 193
+ L+ K+PS PY SRP A
Sbjct: 306 IDQLISKAPSYPYSSSRPSASA 327
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 287 FEGQDTSFXLCLISYIRVLLSHTDHHA 207
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 685
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1
Query: 523 VPPVSCWTPADGVSHTVPIY 582
+P ++CW PADG + Y
Sbjct: 496 MPNINCWRPADGNETSAAYY 515
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +2
Query: 164 SRRVPLDRGKAPPSGRDGRYGTEGLLCRR*GTXQKRYPDPQIPHR 298
S +VP R PP R +Y E G Q+ + P++ +R
Sbjct: 207 SLQVPPSRNVPPPVTRPNQYNPEPNFSLSSGYPQQHFSQPELQNR 251
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,824,625
Number of Sequences: 5004
Number of extensions: 51211
Number of successful extensions: 138
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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