Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2025
         (800 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.         353   5e-99
U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.         353   5e-99
U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.         353   5e-99
CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.          336   3e-94
AY659931-1|AAT51799.1|  167|Anopheles gambiae lysozyme i-1 protein.    24   6.3  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    24   6.3  

>U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score =  353 bits (867), Expect = 5e-99
 Identities = 174/210 (82%), Positives = 176/210 (83%)
 Frame = +3

Query: 81  MCDEXVAALVVDNGSGMCKAGFAXDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 260
           MCDE VAALVVDNGSGMCKAGFA DDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1   MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60

Query: 261 XKRGILTLKYPIEHGIVTNWDDMXKIWHHTFYNELRVXPXEHPXLLTXAPLNPXANRXKM 440
            KRGILTLKYPIEHGIVTNWDDM KIWHHTFYNELRV P EHP LLT APLNP ANR KM
Sbjct: 61  SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120

Query: 441 TQIMFETFNTPAMYVAIQAVLSLYAXGRTTGIVLDSGGRCLPHRAHLRXIRTPPRHPGVW 620
           TQIMFETFNTPAMYVAIQAVLSLYA GRTTGIVLDSG   + H   +      P      
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDG-VSHTVPIYEGYALPHAILRL 179

Query: 621 T*PGRDLTDYLMKILTERGYSFTTTGEREI 710
              GRDLTDYLMKILTERGYSFTTT EREI
Sbjct: 180 DLAGRDLTDYLMKILTERGYSFTTTAEREI 209



 Score = 36.7 bits (81), Expect = 8e-04
 Identities = 18/22 (81%), Positives = 18/22 (81%)
 Frame = +2

Query: 728 EXLXYVALDFXQEMGTAASSSS 793
           E L YVALDF QEM TAASSSS
Sbjct: 215 EKLCYVALDFEQEMATAASSSS 236


>U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score =  353 bits (867), Expect = 5e-99
 Identities = 174/210 (82%), Positives = 176/210 (83%)
 Frame = +3

Query: 81  MCDEXVAALVVDNGSGMCKAGFAXDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 260
           MCDE VAALVVDNGSGMCKAGFA DDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1   MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60

Query: 261 XKRGILTLKYPIEHGIVTNWDDMXKIWHHTFYNELRVXPXEHPXLLTXAPLNPXANRXKM 440
            KRGILTLKYPIEHGIVTNWDDM KIWHHTFYNELRV P EHP LLT APLNP ANR KM
Sbjct: 61  SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120

Query: 441 TQIMFETFNTPAMYVAIQAVLSLYAXGRTTGIVLDSGGRCLPHRAHLRXIRTPPRHPGVW 620
           TQIMFETFNTPAMYVAIQAVLSLYA GRTTGIVLDSG   + H   +      P      
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDG-VSHTVPIYEGYALPHAILRL 179

Query: 621 T*PGRDLTDYLMKILTERGYSFTTTGEREI 710
              GRDLTDYLMKILTERGYSFTTT EREI
Sbjct: 180 DLAGRDLTDYLMKILTERGYSFTTTAEREI 209



 Score = 36.7 bits (81), Expect = 8e-04
 Identities = 18/22 (81%), Positives = 18/22 (81%)
 Frame = +2

Query: 728 EXLXYVALDFXQEMGTAASSSS 793
           E L YVALDF QEM TAASSSS
Sbjct: 215 EKLCYVALDFEQEMATAASSSS 236


>U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score =  353 bits (867), Expect = 5e-99
 Identities = 174/210 (82%), Positives = 176/210 (83%)
 Frame = +3

Query: 81  MCDEXVAALVVDNGSGMCKAGFAXDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 260
           MCDE VAALVVDNGSGMCKAGFA DDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1   MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60

Query: 261 XKRGILTLKYPIEHGIVTNWDDMXKIWHHTFYNELRVXPXEHPXLLTXAPLNPXANRXKM 440
            KRGILTLKYPIEHGIVTNWDDM KIWHHTFYNELRV P EHP LLT APLNP ANR KM
Sbjct: 61  SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120

Query: 441 TQIMFETFNTPAMYVAIQAVLSLYAXGRTTGIVLDSGGRCLPHRAHLRXIRTPPRHPGVW 620
           TQIMFETFNTPAMYVAIQAVLSLYA GRTTGIVLDSG   + H   +      P      
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDG-VSHTVPIYEGYALPHAILRL 179

Query: 621 T*PGRDLTDYLMKILTERGYSFTTTGEREI 710
              GRDLTDYLMKILTERGYSFTTT EREI
Sbjct: 180 DLAGRDLTDYLMKILTERGYSFTTTAEREI 209



 Score = 36.7 bits (81), Expect = 8e-04
 Identities = 18/22 (81%), Positives = 18/22 (81%)
 Frame = +2

Query: 728 EXLXYVALDFXQEMGTAASSSS 793
           E L YVALDF QEM TAASSSS
Sbjct: 215 EKLCYVALDFEQEMATAASSSS 236


>CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.
          Length = 376

 Score =  336 bits (827), Expect = 3e-94
 Identities = 163/210 (77%), Positives = 171/210 (81%)
 Frame = +3

Query: 81  MCDEXVAALVVDNGSGMCKAGFAXDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 260
           MCD+   ALVVDNGSGMCKAGFA DDAPRAVFPSIVGRPRHQGVMVGMG KD+YVGDEAQ
Sbjct: 1   MCDDDAGALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGNKDAYVGDEAQ 60

Query: 261 XKRGILTLKYPIEHGIVTNWDDMXKIWHHTFYNELRVXPXEHPXLLTXAPLNPXANRXKM 440
            KRGILTLKYPIEHGI+TNWDDM KIWHHTFYNELRV P EHP LLT APLNP +NR KM
Sbjct: 61  SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKSNREKM 120

Query: 441 TQIMFETFNTPAMYVAIQAVLSLYAXGRTTGIVLDSGGRCLPHRAHLRXIRTPPRHPGVW 620
           TQIMFETF  PA+YVAIQAVLSLYA GRTTG+VLDSG   + H   +      P      
Sbjct: 121 TQIMFETFAAPAVYVAIQAVLSLYASGRTTGVVLDSGDG-VSHTVPIYEGYALPHAILRM 179

Query: 621 T*PGRDLTDYLMKILTERGYSFTTTGEREI 710
              GRDLTDYLMKILTERGYSFTTT EREI
Sbjct: 180 DLAGRDLTDYLMKILTERGYSFTTTAEREI 209



 Score = 32.7 bits (71), Expect = 0.014
 Identities = 16/22 (72%), Positives = 17/22 (77%)
 Frame = +2

Query: 728 EXLXYVALDFXQEMGTAASSSS 793
           E L YVALDF QEM  AA+SSS
Sbjct: 215 EKLCYVALDFEQEMQAAAASSS 236


>AY659931-1|AAT51799.1|  167|Anopheles gambiae lysozyme i-1 protein.
          Length = 167

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 9/19 (47%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -1

Query: 485 DVHG-GRVECFEHDLGHLL 432
           D +G GR++CF+H + H L
Sbjct: 116 DCNGDGRIDCFDHAIVHKL 134


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 188 GKAPPSGRDGRYGTEGL 238
           G+  P GRDG +G  GL
Sbjct: 344 GQPGPRGRDGNFGPVGL 360


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 757,019
Number of Sequences: 2352
Number of extensions: 14884
Number of successful extensions: 55
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 84408009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)