Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2023
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces po...    41   1e-04
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    28   1.5  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    28   1.5  
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi...    27   2.0  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    26   4.5  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    26   6.0  
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    25   7.9  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    25   7.9  

>SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 188

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 16/58 (27%), Positives = 32/58 (55%)
 Frame = +3

Query: 9   KFKYWGWTGDNMYFIRGSNDNISIGAGDGKFGLWLDGDLYLGRTQRCKTYGNEPLTTR 182
           K+ ++ + G++ +    +   ++ G G+G++ LWLDG L    + R   + N PL+ R
Sbjct: 113 KYVHYPFVGNSNFVAYCTKSFLAFGGGNGRYSLWLDGSLEYAYSSRTPAFENNPLSYR 170


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 312 CYENLTLLQICLYDVSMQLSQNFCSDYASLVKRTEP*PMFTCSSSI 449
           C ENL LLQICL  V+ +      +    L++ ++P    TCS+ +
Sbjct: 104 CSENLALLQICLNHVN-EYPLVLLTLTIRLLRFSKPTSAITCSNDV 148


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/40 (35%), Positives = 27/40 (67%)
 Frame = +3

Query: 459 PDTSAALRRRVNPSQLSLSKLEKRRALPRGPGDLYVSIQL 578
           P + +++ + VNPS+  +SK+E  RA   G G+++ SI++
Sbjct: 410 PTSHSSISKVVNPSEKVISKIE--RACLAGNGNVHPSIKM 447


>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 506

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -2

Query: 615 VLFTLLTTNAQYLIELTRKDHRD-RGG 538
           +L  ++ TNA+YL+ELT K   D +GG
Sbjct: 262 ILNHMVETNAEYLMELTNKTKADVKGG 288


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 273 SRHETSFTLSYELCYENLTLLQICLYDVSMQLSQNFCSDYASLV 404
           +R E++   +Y+  Y+ + +  IC++ +S QL Q    D  SLV
Sbjct: 52  TRSESNLQSNYK--YDQVPMYSICVFCLSGQLLQTLTWDKTSLV 93


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -3

Query: 197 HDEVLSRRQR-LVTVRLAPLRAPQVQVSVQPQTEFSIASADRYIVVAPANEIHVVSRPSP 21
           H E + +  R L +V L   + P  +V   P++   +  A +Y  V+P NE    SRPSP
Sbjct: 215 HQETIDKILRFLASVYLDGKQKPPSKV--MPKSRRLLLEA-KYPTVSPTNEPSAHSRPSP 271


>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 291 FTLSYELCYENL-TLLQICLYDVSMQLSQNFCS 386
           F   Y L   ++ +L  IC+Y+++++ + +FCS
Sbjct: 246 FDSGYNLTVSDVRSLYYICVYEIALRDNSDFCS 278


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 50  HSREQRQYIDRRWRWKIRSVAGR 118
           + REQR+Y +   RW+I    GR
Sbjct: 115 YEREQREYQNNLERWEINPETGR 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,539,365
Number of Sequences: 5004
Number of extensions: 45681
Number of successful extensions: 120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)