Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2023
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0829 - 6254769-6254852,6254940-6255024,6255158-6255245,625... 54 1e-07
02_05_0784 + 31726453-31726563,31726820-31726897,31727307-317278... 54 1e-07
07_03_0171 + 14687791-14687898,14688465-14688550,14689474-146895... 52 3e-07
12_01_0371 - 2851186-2851491,2851582-2851765,2851967-2852156,285... 32 0.50
01_01_0690 - 5306754-5307047,5307107-5307279,5308223-5308370,530... 31 0.88
06_01_0499 - 3581145-3582425 29 2.7
03_04_0037 + 16694760-16695227,16695563-16695642,16695735-166958... 29 3.5
07_01_0181 + 1274177-1274200,1274335-1276161,1276519-1277448,127... 28 6.2
12_02_0588 - 20842209-20842337,20842464-20842560,20842620-208427... 28 8.2
07_03_1424 - 26474464-26474514,26474549-26474635,26474905-264750... 28 8.2
05_04_0025 - 17278869-17279386,17279485-17279602,17279806-172800... 28 8.2
04_03_0518 - 16727138-16727379,16727457-16727652 28 8.2
>06_01_0829 -
6254769-6254852,6254940-6255024,6255158-6255245,
6255344-6255407,6255496-6255576,6256709-6256781,
6256871-6257385,6258168-6258284
Length = 368
Score = 53.6 bits (123), Expect = 1e-07
Identities = 27/65 (41%), Positives = 38/65 (58%)
Frame = +3
Query: 30 TGDNMYFIRGSNDNISIGAGDGKFGLWLDGDLYLGRTQRCKTYGNEPLTTREDFIVKIME 209
TG N YF S D +++G G G F L+LDGDL G + +T+ N L+ +F VK +E
Sbjct: 283 TGANNYFTFCSTDYLAMGGG-GHFALYLDGDLLNGSSSTSETFNNPCLSRSREFEVKDVE 341
Query: 210 CWTFI 224
W F+
Sbjct: 342 LWGFV 346
>02_05_0784 +
31726453-31726563,31726820-31726897,31727307-31727843,
31728225-31728305,31728394-31728457,31728738-31728825,
31728934-31729018,31729103-31729186
Length = 375
Score = 53.6 bits (123), Expect = 1e-07
Identities = 27/65 (41%), Positives = 37/65 (56%)
Frame = +3
Query: 30 TGDNMYFIRGSNDNISIGAGDGKFGLWLDGDLYLGRTQRCKTYGNEPLTTREDFIVKIME 209
TG N YF S D +++G G G F L+LD DL G + +T+ N L+ DF VK +E
Sbjct: 290 TGANNYFTVCSTDYLALGGG-GHFALYLDADLLSGSSSNSETFNNMCLSHSPDFAVKDVE 348
Query: 210 CWTFI 224
W F+
Sbjct: 349 LWGFV 353
>07_03_0171 +
14687791-14687898,14688465-14688550,14689474-14689546,
14689661-14689741,14690010-14690073,14690673-14690760,
14690843-14690927,14692190-14692228
Length = 207
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/64 (42%), Positives = 35/64 (54%)
Frame = +3
Query: 30 TGDNMYFIRGSNDNISIGAGDGKFGLWLDGDLYLGRTQRCKTYGNEPLTTREDFIVKIME 209
TG N Y+ ND ++ G G G F L LD DL G + C+T+GN L DF +K +E
Sbjct: 137 TGANRYYYLCLNDALAFGGG-GSFALCLDEDLLHGTSGSCQTFGNSCLAHSPDFELKNVE 195
Query: 210 CWTF 221
W F
Sbjct: 196 LWGF 199
>12_01_0371 -
2851186-2851491,2851582-2851765,2851967-2852156,
2853375-2853613,2853862-2853947,2854720-2854827,
2854929-2855031,2855152-2855213
Length = 425
Score = 31.9 bits (69), Expect = 0.50
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +3
Query: 60 SNDNISIGAGDG----KFGLWLDGDLYLGRTQRCKTYGNEPLTTREDFIVKIMECW 215
S+D+I G G G FG +L + G + C T+ + L+ F +++ECW
Sbjct: 330 SSDSIPNGIGFGGQPHHFGFFLSANFDQGHSFTCTTFTSPALSKTNRFRPEVIECW 385
>01_01_0690 -
5306754-5307047,5307107-5307279,5308223-5308370,
5309110-5309356,5309694-5309839,5312482-5312707,
5313652-5313874,5314054-5314202,5315345-5315514,
5316064-5316135,5317610-5317741,5317813-5317900,
5319440-5319656,5320123-5320306,5320644-5320727,
5321148-5321242,5321519-5321562,5321707-5322367,
5323053-5323356
Length = 1218
Score = 31.1 bits (67), Expect = 0.88
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 456 CPDTSAALRRRVNPSQLSLSKLEKRR 533
CPDT+ LR V+P L+L +LE R+
Sbjct: 287 CPDTTNVLREVVSPQMLALGELEFRK 312
>06_01_0499 - 3581145-3582425
Length = 426
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 14 QILGMDGRQHVFHSREQRQYIDRRWRW 94
+++ M+ FHSR+++ YI+R +RW
Sbjct: 383 RVVDMNKEMTYFHSRDKQYYINRGFRW 409
>03_04_0037 +
16694760-16695227,16695563-16695642,16695735-16695828,
16695973-16696071,16696650-16696742,16696822-16696941,
16697422-16697525,16697734-16697806,16698023-16698085
Length = 397
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 470 ACIRTRIDTRRARKHWSGLSTLD*GRVVTTKILTQLHRNV 351
AC +T D + R+ W+ L+ L G V KI +HRNV
Sbjct: 249 ACGKTGYDYQSVRR-WTTLNRLGYGLVECEKIFIPIHRNV 287
>07_01_0181 +
1274177-1274200,1274335-1276161,1276519-1277448,
1278314-1278367
Length = 944
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +3
Query: 288 SFTLSYELCYENLTLLQI-CLYDVSMQLSQNFCS 386
++ LSY CYE+L+L Q+ ++D+S Q + + S
Sbjct: 740 TYLLSYSSCYESLSLDQLTTMFDLSEQQAHSIVS 773
>12_02_0588 -
20842209-20842337,20842464-20842560,20842620-20842733,
20843140-20843749,20844739-20845462,20845542-20845620,
20845783-20845865,20846148-20846226,20846332-20846420,
20846499-20846591,20847288-20847337,20847417-20847600,
20849227-20849542,20849626-20849657
Length = 892
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 693 YIYVCIKXYHTXQIIIFFCLFVCYKYV 613
Y VC+K Y ++I C VC K+V
Sbjct: 275 YCPVCLKVYRDSEVIPMVCCDVCEKWV 301
>07_03_1424 -
26474464-26474514,26474549-26474635,26474905-26475006,
26475149-26475260,26475405-26475463,26475559-26475633,
26475734-26475832,26476128-26476343,26476426-26476500,
26476583-26476670,26476757-26476902,26477240-26477347,
26477417-26478436,26478437-26478715,26479471-26480520,
26480636-26480692,26480780-26480837,26481379-26481458,
26481598-26481654,26481764-26481833,26481967-26482202,
26482341-26482445,26482534-26482680,26482758-26482823,
26482916-26482979,26484040-26484200,26484308-26484400,
26484487-26484600,26484684-26484803,26484893-26484976,
26485061-26485216,26485389-26485811
Length = 1885
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 432 TCSSSIDACPDTSAALRRRVNPSQLSLSKLEK 527
TC +DAC + + L R VN + L + +K
Sbjct: 642 TCRKELDACLENNVLLAREVNKLRCELKQYQK 673
>05_04_0025 -
17278869-17279386,17279485-17279602,17279806-17280059,
17280095-17280205,17280374-17280513,17280583-17280641,
17280712-17280897,17280965-17281089,17281282-17281581,
17281742-17281841
Length = 636
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = -3
Query: 179 RRQRLVTVRLAPLRAPQVQVSVQPQTEFSIASADRYIVVAPANEIHVVSRP 27
RRQRLVTV RA VQ + S+A+A +V A + S P
Sbjct: 247 RRQRLVTVGEKETRAKAVQARSGGTSSVSLAAASTDVVPAAGSREATPSGP 297
>04_03_0518 - 16727138-16727379,16727457-16727652
Length = 145
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 14 QILGMDGRQHVFHSREQRQYIDRRWRWKIRSVAGRR 121
++ GMD +H R +R+ R W W++ + G R
Sbjct: 28 KMAGMDQTRHGGLPRRRRERQARPWHWRVHAQVGAR 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,531,047
Number of Sequences: 37544
Number of extensions: 308364
Number of successful extensions: 895
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -