Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2023
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41109-16|AAO12424.1| 440|Caenorhabditis elegans Hypothetical p... 85 6e-17
U41109-15|AAZ91354.1| 819|Caenorhabditis elegans Hypothetical p... 85 6e-17
U41109-14|AAO12423.1| 840|Caenorhabditis elegans Hypothetical p... 85 6e-17
Z81497-6|CAB04082.2| 604|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z75953-5|CAB00102.2| 604|Caenorhabditis elegans Hypothetical pr... 29 4.2
U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclas... 29 4.2
Z67754-2|CAA91752.2| 677|Caenorhabditis elegans Hypothetical pr... 28 5.6
U40423-2|AAA81451.1| 160|Caenorhabditis elegans Hypothetical pr... 27 9.8
AF077542-8|AAC26300.2| 342|Caenorhabditis elegans Serpentine re... 27 9.8
>U41109-16|AAO12424.1| 440|Caenorhabditis elegans Hypothetical
protein F52E1.13b protein.
Length = 440
Score = 84.6 bits (200), Expect = 6e-17
Identities = 34/72 (47%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Frame = +3
Query: 9 KFKYWGWTGDNMYFIRGSNDNISIGAGDGKFGLWLDGDLYLGRTQRCKTYGNEPLT-TRE 185
+ + + WTGDN YF+ + D++SIGAG G+ GLWLD DL G +Q+C+T+ NEPL +
Sbjct: 367 ELRQYNWTGDNQYFVNAAKDSLSIGAGSGRNGLWLDADLNHGSSQKCETFDNEPLCGDDQ 426
Query: 186 DFIVKIMECWTF 221
DFI++ +E + F
Sbjct: 427 DFIIQFIEAYGF 438
>U41109-15|AAZ91354.1| 819|Caenorhabditis elegans Hypothetical
protein F52E1.13c protein.
Length = 819
Score = 84.6 bits (200), Expect = 6e-17
Identities = 34/72 (47%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Frame = +3
Query: 9 KFKYWGWTGDNMYFIRGSNDNISIGAGDGKFGLWLDGDLYLGRTQRCKTYGNEPLT-TRE 185
+ + + WTGDN YF+ + D++SIGAG G+ GLWLD DL G +Q+C+T+ NEPL +
Sbjct: 746 ELRQYNWTGDNQYFVNAAKDSLSIGAGSGRNGLWLDADLNHGSSQKCETFDNEPLCGDDQ 805
Query: 186 DFIVKIMECWTF 221
DFI++ +E + F
Sbjct: 806 DFIIQFIEAYGF 817
>U41109-14|AAO12423.1| 840|Caenorhabditis elegans Hypothetical
protein F52E1.13a protein.
Length = 840
Score = 84.6 bits (200), Expect = 6e-17
Identities = 34/72 (47%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Frame = +3
Query: 9 KFKYWGWTGDNMYFIRGSNDNISIGAGDGKFGLWLDGDLYLGRTQRCKTYGNEPLT-TRE 185
+ + + WTGDN YF+ + D++SIGAG G+ GLWLD DL G +Q+C+T+ NEPL +
Sbjct: 767 ELRQYNWTGDNQYFVNAAKDSLSIGAGSGRNGLWLDADLNHGSSQKCETFDNEPLCGDDQ 826
Query: 186 DFIVKIMECWTF 221
DFI++ +E + F
Sbjct: 827 DFIIQFIEAYGF 838
>Z81497-6|CAB04082.2| 604|Caenorhabditis elegans Hypothetical
protein F10C2.3 protein.
Length = 604
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 129 LGRTQRCKTYGNEPLTTREDFIVKIMECWTFI 224
+G R YGN+ L ++ F+ K+ C TF+
Sbjct: 569 IGDINRINKYGNQSLCVQDQFLRKLCFCSTFL 600
>Z75953-5|CAB00102.2| 604|Caenorhabditis elegans Hypothetical
protein F10C2.3 protein.
Length = 604
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 129 LGRTQRCKTYGNEPLTTREDFIVKIMECWTFI 224
+G R YGN+ L ++ F+ K+ C TF+
Sbjct: 569 IGDINRINKYGNQSLCVQDQFLRKLCFCSTFL 600
>U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclase
protein 12 protein.
Length = 1280
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 230 GAEPASARATPAHLISTRNKLYIIL*TLLRKFDTF 334
G S +TP +++ NKLY + +++R++D +
Sbjct: 1035 GFTTISGESTPMEVVTFLNKLYTLFDSIIRRYDVY 1069
>Z67754-2|CAA91752.2| 677|Caenorhabditis elegans Hypothetical
protein C34E11.2 protein.
Length = 677
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 100 NFPSPAPIDILSLLPRMKYMLSPVH-PQYL 14
N PSPAP + LPR Y SP H P+++
Sbjct: 422 NPPSPAPTVNVPTLPRKDYNQSPAHTPEHV 451
>U40423-2|AAA81451.1| 160|Caenorhabditis elegans Hypothetical
protein C24H10.3 protein.
Length = 160
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 291 FTLSYELCYENLTLLQICLYDVSMQLS 371
+ +Y CY +L +Q CL D LS
Sbjct: 130 YVFNYRFCYADLVKIQTCLSDAEYYLS 156
>AF077542-8|AAC26300.2| 342|Caenorhabditis elegans Serpentine
receptor, class z protein64 protein.
Length = 342
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 693 YIYVC-IKXYHTXQIIIFFCLFVCYKYVLFTLLTTNAQYL 577
YIYV I ++IF V YK V+FTL A+Y+
Sbjct: 48 YIYVNRINRRRDENVLIFPITNVFYKMVIFTLFVVVAKYI 87
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,274,425
Number of Sequences: 27780
Number of extensions: 266070
Number of successful extensions: 793
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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