Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2022
(350 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 27 0.64
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi... 26 2.0
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 25 4.5
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 25 4.5
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 4.5
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 24 6.0
SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces po... 24 6.0
SPAP27G11.09c |||GTP cyclohydrolase |Schizosaccharomyces pombe|c... 24 6.0
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch... 24 7.9
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 24 7.9
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 24 7.9
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 24 7.9
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 24 7.9
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 27.5 bits (58), Expect = 0.64
Identities = 14/59 (23%), Positives = 28/59 (47%)
Frame = +3
Query: 102 FHIAHATSSIASILSQCCQPHPTVQSIQMSSTIEQRGPLHVSRELSTMNWPDMGQFXNP 278
FH ++S + + C P+P + SS++E + P S+++ + +G NP
Sbjct: 31 FHEFSSSSFMDPVSLFCSSPYPNLPPHSRSSSLESKKPSVASQDVKSDGTLPIGTNNNP 89
>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 25.8 bits (54), Expect = 2.0
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +2
Query: 59 WRAVQSACLWVHHQIPYC 112
W+ S CLW H IP C
Sbjct: 171 WKDKVSFCLWSHRFIPAC 188
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 24.6 bits (51), Expect = 4.5
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +3
Query: 66 RYRVPVSGSTTRFHIAHATSSIASILSQCCQPHPTVQSIQMSSTI 200
RYR+P R + + +I+ + P+VQ+IQ+ I
Sbjct: 463 RYRLPEKAKVIRVGLPRGFKNKGNIVIDENEDEPSVQTIQLQGKI 507
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 24.6 bits (51), Expect = 4.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 158 TSPHRAEHPNVLHNRTTRT 214
T+P AEHP+VL N + T
Sbjct: 4 TTPEVAEHPDVLRNMSRYT 22
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 24.6 bits (51), Expect = 4.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 114 VQYGIWWWTQRQALCTARHLY 52
V + I+WW ALC A L+
Sbjct: 1531 VAHLIYWWVSIMALCVAPFLF 1551
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 24.2 bits (50), Expect = 6.0
Identities = 10/26 (38%), Positives = 11/26 (42%)
Frame = +2
Query: 146 PVLPTSPHRAEHPNVLHNRTTRTTPC 223
P L P HP V HN + PC
Sbjct: 643 PYLCVLPKSCHHPQVKHNCHPTSEPC 668
>SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 439
Score = 24.2 bits (50), Expect = 6.0
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +3
Query: 189 SSTIEQRGPLHVSRELSTM 245
++T E+RGP+ V+R + T+
Sbjct: 53 AATAEERGPITVARSIETL 71
>SPAP27G11.09c |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 326
Score = 24.2 bits (50), Expect = 6.0
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = -1
Query: 248 VHGTQLPGNMEWSSLFDCGGHLD 180
+H G WS+ DCG LD
Sbjct: 167 IHSECYTGETAWSARCDCGEQLD 189
>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 23.8 bits (49), Expect = 7.9
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 77 HSVPHAICISNLNDFFYTKWM 15
H +P CIS+ + F +WM
Sbjct: 385 HYLPSTSCISDYGETFLLEWM 405
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 23.8 bits (49), Expect = 7.9
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +3
Query: 120 TSSIASILSQCCQPHPTVQSIQMSSTIEQ 206
TSSI+ S PH + + ++ST+++
Sbjct: 443 TSSISDTSSNSSAPHEQLNATSLASTVDE 471
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 23.8 bits (49), Expect = 7.9
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = +3
Query: 84 SGSTTRFHIAHATSSIASILSQCCQPHPTVQSIQMSSTIEQRGPLHVSRELSTMN 248
S STT A ATSS A + P T S +SS S L+++N
Sbjct: 258 SNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSVN 312
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 23.8 bits (49), Expect = 7.9
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 180 IQMSSTIEQRGPLHVSRELSTMNWPDMGQFXNPPAGTTRGS 302
IQ +STI G + E S+ N P+M N + GS
Sbjct: 2 IQTASTISSNGGTNQGMESSSANSPEMNGTQNSMSVGMSGS 42
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 23.8 bits (49), Expect = 7.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 89 PRDRHSVPHAICISNLNDFFYTKWMHFTL 3
P H++PH + FF+ W+H TL
Sbjct: 4030 PTMTHTLPH----NRFRLFFFLSWLHATL 4054
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,621,849
Number of Sequences: 5004
Number of extensions: 32031
Number of successful extensions: 91
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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