Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2022
(350 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739... 29 0.78
08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535... 29 1.0
11_06_0621 + 25587476-25587604,25588230-25588423,25588800-255888... 28 2.4
01_01_0505 - 3695937-3695972,3696251-3696316,3696658-3696747,369... 27 4.1
08_02_1264 + 25706009-25706148,25706613-25706716,25707108-257072... 27 5.5
08_02_0012 - 11247424-11247702 27 5.5
04_01_0614 + 8049199-8049579 27 5.5
01_07_0218 + 42073425-42073561,42073714-42073743,42073957-420741... 27 5.5
10_08_0558 + 18756797-18756887,18757189-18757262,18759881-187600... 26 7.2
08_01_0421 - 3735155-3736067,3736154-3736176 26 7.2
03_01_0314 - 2477593-2480685 26 7.2
02_01_0503 + 3669758-3670059,3670351-3670870 26 7.2
02_01_0408 - 2972240-2975380 26 7.2
12_02_0927 + 24473634-24474236,24474464-24474518,24474579-24474952 26 9.6
08_01_0905 - 8928261-8928875 26 9.6
08_01_0016 - 109152-109214,109296-109385,109853-109954,110046-11... 26 9.6
04_04_1397 - 33230416-33230742,33230852-33231007,33231130-332315... 26 9.6
02_01_0057 + 420812-421556,422473-422597,422622-422912,423357-42... 26 9.6
>07_03_1567 -
27772815-27773302,27773471-27773561,27773641-27773988,
27774929-27775110,27775191-27775368,27775453-27775605,
27775993-27776232,27776369-27776449,27776485-27776730,
27777151-27777240,27777536-27777778,27778365-27778529,
27779017-27779080,27779162-27779286,27779383-27779476,
27779647-27779714,27779798-27779989,27780618-27780752,
27780847-27780934,27781014-27781107,27781484-27781547,
27781657-27781708,27781911-27782014,27782099-27782158,
27782687-27782770,27782892-27783125,27783442-27783864,
27784675-27784736,27784867-27785521
Length = 1700
Score = 29.5 bits (63), Expect = 0.78
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 167 HRAEHPNVLHNRTTRTTPCFQGVEYHELARHG 262
HRA+ P+ LH +T F V+ HE+ G
Sbjct: 321 HRAKKPDKLHQKTVGRKDVFSNVDSHEVRTSG 352
>08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,
5350375-5350589,5351123-5351393,5351986-5352161,
5352287-5352394,5352821-5352930,5354291-5354393,
5354658-5354828,5354952-5355080,5355322-5355504,
5355612-5355701,5355823-5355934,5356100-5356227,
5357769-5357825,5357872-5357923,5358318-5358393,
5358860-5358950,5359046-5359224,5359563-5359681,
5359783-5359880
Length = 1955
Score = 29.1 bits (62), Expect = 1.0
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = +3
Query: 51 NTNGVRYRVPVSGSTTR---FHIAHATSSIASI 140
N NG Y +PVSGS + HI H +A I
Sbjct: 1320 NRNGTDYHIPVSGSNAKEPPIHIVHIAVEMAPI 1352
>11_06_0621 +
25587476-25587604,25588230-25588423,25588800-25588874,
25589434-25591852
Length = 938
Score = 27.9 bits (59), Expect = 2.4
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +3
Query: 141 LSQCCQPHPTVQSIQMSSTIEQRGPLHVSRELSTMNWPDMGQFXNP-PAGTTRGSWV*SR 317
L PHP + ++ + RG + ++E N+P + QF NP P R V R
Sbjct: 14 LHHASHPHPHILLAVVTVSYPNRGKVDAAKETLNPNFPFV-QFSNPQPVPCARRGAVGRR 72
Query: 318 AA 323
AA
Sbjct: 73 AA 74
>01_01_0505 -
3695937-3695972,3696251-3696316,3696658-3696747,
3696934-3697143,3697371-3697404,3697566-3697912
Length = 260
Score = 27.1 bits (57), Expect = 4.1
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = -2
Query: 196 VEDIWMLCT--VG*GWQHWLRMLAMEEVACAIW-NLVVDPETGTLYRTPFVFLI*TIFF 29
+ED W C + GW R+++ +A + ++VVD + LY T + FL+ T++F
Sbjct: 68 LEDCWKPCLEQIHPGWLLAFRVVSFFILASLLAVDVVVDGWSVFLYYTQWTFLLVTLYF 126
>08_02_1264 +
25706009-25706148,25706613-25706716,25707108-25707284,
25707775-25709708,25709781-25709867,25710058-25710091,
25710293-25710381,25710522-25710674
Length = 905
Score = 26.6 bits (56), Expect = 5.5
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
Frame = +3
Query: 21 FCVKKIV*IRNTNGVRYRVPVSGSTTRFHIAHATSSIASILSQCCQPHPTVQSIQMSSTI 200
FC+++++ V+ + + S I TSS + +L + V S +SS+
Sbjct: 395 FCLQRLLNFPTNIDVQKLIEKANSLQSIAIDANTSSSSFLLKRDSYEFDRVHS-NLSSST 453
Query: 201 EQRGPLH-VSRELSTMNWPDMGQFXNPPAGTTRGS 302
R PLH VS W ++ + P RG+
Sbjct: 454 PPRTPLHPVSESYWEEKWRNVHKDGTTPKEVERGN 488
>08_02_0012 - 11247424-11247702
Length = 92
Score = 26.6 bits (56), Expect = 5.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 228 WKHGVVLVVRLWRTFGCSARWGEVGSTG*ECWQWRR 121
W VLV+ L F + R V ++G W+WRR
Sbjct: 37 WSGNGVLVLMLHLDFQAATRARRVTTSGHGGWRWRR 72
>04_01_0614 + 8049199-8049579
Length = 126
Score = 26.6 bits (56), Expect = 5.5
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +3
Query: 48 RNTNGVRYRVPVSGSTTRFHIAHATSSIASILSQCCQPHPTVQSIQ 185
R+ N + STTR A ++ + CC P P V + Q
Sbjct: 63 RDKNNAAATATAAASTTRLASARQRTAHCPAAAACCPPRPRVANRQ 108
>01_07_0218 +
42073425-42073561,42073714-42073743,42073957-42074137,
42074742-42074806,42075374-42075545,42076570-42076769,
42076872-42076944,42077150-42077401
Length = 369
Score = 26.6 bits (56), Expect = 5.5
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 159 PHPTVQSIQMSSTIEQRGPLHV 224
PH VQS+Q+S ++ GP+ +
Sbjct: 155 PHINVQSLQLSPSVRTEGPITI 176
>10_08_0558 +
18756797-18756887,18757189-18757262,18759881-18760069,
18760190-18760309,18760457-18760521,18760684-18760828,
18761304-18763337,18763904-18764025,18764127-18764309,
18764635-18764690,18765086-18765141
Length = 1044
Score = 26.2 bits (55), Expect = 7.2
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 211 PRCSIVEDIWMLCTVG 164
P CSI IW CTVG
Sbjct: 7 PPCSIASRIWGACTVG 22
>08_01_0421 - 3735155-3736067,3736154-3736176
Length = 311
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -3
Query: 267 IVPCLASSWYSTPWKHGVVLVVRLWRTFGCSARW 166
+VP S ST WK G ++ + W C R+
Sbjct: 257 VVPFTVSGQASTRWKVGGLVPFKYWTRLRCDLRF 290
>03_01_0314 - 2477593-2480685
Length = 1030
Score = 26.2 bits (55), Expect = 7.2
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 231 PWKHGVVLVVRLWRTFGC 178
P H VV V +LWR GC
Sbjct: 728 PRHHAVVAVKKLWRAAGC 745
>02_01_0503 + 3669758-3670059,3670351-3670870
Length = 273
Score = 26.2 bits (55), Expect = 7.2
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = -3
Query: 135 WQWRRWHVQYGIWW 94
W W WHV WW
Sbjct: 104 WNWSPWHVIQRPWW 117
>02_01_0408 - 2972240-2975380
Length = 1046
Score = 26.2 bits (55), Expect = 7.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 96 TRFHIAHATSSIASILSQCCQPHPTVQSIQMSSTI 200
TRF IA S S + C+PH + I+ S+ +
Sbjct: 870 TRFKIARGASQGLSYIHDVCKPHIVHRDIKSSNIL 904
>12_02_0927 + 24473634-24474236,24474464-24474518,24474579-24474952
Length = 343
Score = 25.8 bits (54), Expect = 9.6
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 168 TVQSIQMSSTIEQRGPLHVSRELSTMNW-PDMGQFXNPPAGTTRGS 302
TVQ IQ SST+ G + ++E + M P + Q +P T +GS
Sbjct: 210 TVQCIQSSSTVNNEG--YYTQEFALMKLDPPIAQRRSPRHQTGQGS 253
>08_01_0905 - 8928261-8928875
Length = 204
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 171 RWGEVGSTG*ECWQWRRWHVQYGIWWWT 88
RWG V + + RR H + G+ WW+
Sbjct: 5 RWGSVAGSAAWPVRGRRRHGEDGVTWWS 32
>08_01_0016 -
109152-109214,109296-109385,109853-109954,110046-110213,
110510-110530,110836-110896,110987-111099,112125-112202,
112294-112434,112532-112696,112776-112868,113096-113162,
113285-113388,113896-114041,114303-114579
Length = 562
Score = 25.8 bits (54), Expect = 9.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -1
Query: 86 RDRHSVPHAICISNLNDFFYTKWMH 12
R R S+ +AIC++++ + WMH
Sbjct: 292 RVRESIDYAICLNSVGSWDNELWMH 316
>04_04_1397 -
33230416-33230742,33230852-33231007,33231130-33231543,
33234177-33234307,33235076-33235202,33235709-33236209,
33237624-33237935,33238690-33238719
Length = 665
Score = 25.8 bits (54), Expect = 9.6
Identities = 6/20 (30%), Positives = 12/20 (60%)
Frame = -3
Query: 135 WQWRRWHVQYGIWWWTQRQA 76
W+W + +G+W W + +A
Sbjct: 71 WRWAKSRKNFGMWTWLESKA 90
>02_01_0057 +
420812-421556,422473-422597,422622-422912,423357-423555,
423737-423800,423894-423957,424055-424135,424334-424420,
424492-424500
Length = 554
Score = 25.8 bits (54), Expect = 9.6
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 164 PHRAEHPNVLHNRTTRTTPCFQGVEYHELARHGTISXPASGDDTWVLGLITC 319
PHR E P VLH F+ ++ L GTI P + W ++ C
Sbjct: 160 PHRTEWPQVLHGNNF-LRQWFRDKQW--LNDDGTIKVPTGIEFLWAHRVLCC 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,622,750
Number of Sequences: 37544
Number of extensions: 255769
Number of successful extensions: 787
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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