Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2022
         (350 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49956-1|AAO38615.1|  669|Caenorhabditis elegans Hypothetical pr...    30   0.41 
AC006696-2|ABQ13058.1|  129|Caenorhabditis elegans Hypothetical ...    27   2.9  
AC006696-1|AAF39991.1|  151|Caenorhabditis elegans Hypothetical ...    27   2.9  
U40421-2|AAA81438.1|  453|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z92825-3|CAB07311.1|  531|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U28971-8|AAD31046.2|  767|Caenorhabditis elegans Related to isle...    27   5.0  
AJ245560-1|CAB52188.1|  767|Caenorhabditis elegans IDA-1 protein...    27   5.0  
AF126740-1|AAK14908.1|  767|Caenorhabditis elegans IA2 protein.        27   5.0  
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p...    26   6.6  
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p...    26   6.6  
AF068717-4|AAC17764.2|  357|Caenorhabditis elegans Serpentine re...    26   6.6  
AF036695-3|ABD63231.1|  193|Caenorhabditis elegans Hypothetical ...    26   6.6  
Z77133-2|CAB00864.2|  664|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>U49956-1|AAO38615.1|  669|Caenorhabditis elegans Hypothetical
           protein M03A1.3 protein.
          Length = 669

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -3

Query: 219 GVVLVVRLWRTFGCSARWGEVGSTG*ECWQWRRWHVQYG 103
           GV  +V        S  W   G TG E W W +WH  +G
Sbjct: 487 GVCCIVTSILCILISTNWTWKG-TGSEAWYWTQWHTDFG 524


>AC006696-2|ABQ13058.1|  129|Caenorhabditis elegans Hypothetical
           protein W08E12.8b protein.
          Length = 129

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 69  YRVPVSGSTTRFHIAHATSSIASILSQCCQPHPTVQSIQMSSTIE 203
           Y+  V+ +T  F +     SI  +L    QP PTV+SI++   ++
Sbjct: 77  YQSLVANNTLAFPVFGGPPSIFPLLVPPPQPQPTVESIELLKILQ 121


>AC006696-1|AAF39991.1|  151|Caenorhabditis elegans Hypothetical
           protein W08E12.8a protein.
          Length = 151

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 69  YRVPVSGSTTRFHIAHATSSIASILSQCCQPHPTVQSIQMSSTIE 203
           Y+  V+ +T  F +     SI  +L    QP PTV+SI++   ++
Sbjct: 99  YQSLVANNTLAFPVFGGPPSIFPLLVPPPQPQPTVESIELLKILQ 143


>U40421-2|AAA81438.1|  453|Caenorhabditis elegans Hypothetical
           protein C02B8.5 protein.
          Length = 453

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
 Frame = -3

Query: 216 VVLVVRLWRTFGCSARWGEVGSTG*E-------CWQWRRWHVQY 106
           + LV+ +  + GC  R GE   T  E       CWQWR+    Y
Sbjct: 389 IKLVLGVVTSLGCQYRRGEALQTNSEWCGLCNLCWQWRKLPADY 432


>Z92825-3|CAB07311.1|  531|Caenorhabditis elegans Hypothetical
           protein C13C4.5 protein.
          Length = 531

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 233 VEYHELAR-HGTISXPASGDDTWVLGLITCCXGXLXIA 343
           ++Y + AR +GTI+     +   V G +TC  G L +A
Sbjct: 297 IQYADSARRNGTITEDQKANINLVFGALTCVGGVLGVA 334


>U28971-8|AAD31046.2|  767|Caenorhabditis elegans Related to islet
           cell diabetesautoantigen protein 1 protein.
          Length = 767

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -3

Query: 249 SSWYSTPWKHGVVLVVRLWRTFGCSAR---WGEVGS 151
           ++++ T W+HGV LVV L     C      W + GS
Sbjct: 581 AAFWQTIWQHGVCLVVNLSTPEECKQEKNYWPDTGS 616


>AJ245560-1|CAB52188.1|  767|Caenorhabditis elegans IDA-1 protein
           protein.
          Length = 767

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -3

Query: 249 SSWYSTPWKHGVVLVVRLWRTFGCSAR---WGEVGS 151
           ++++ T W+HGV LVV L     C      W + GS
Sbjct: 581 AAFWQTIWQHGVCLVVNLSTPEECKQEKNYWPDTGS 616


>AF126740-1|AAK14908.1|  767|Caenorhabditis elegans IA2 protein.
          Length = 767

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -3

Query: 249 SSWYSTPWKHGVVLVVRLWRTFGCSAR---WGEVGS 151
           ++++ T W+HGV LVV L     C      W + GS
Sbjct: 581 AAFWQTIWQHGVCLVVNLSTPEECKQEKNYWPDTGS 616


>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
            protein F52C9.1a protein.
          Length = 1336

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 260  HVWPVHGTQLPGNMEWSSLFDCGGHL 183
            HVW    T L   MEW S    GG++
Sbjct: 1176 HVWDPFRTTLLAQMEWDSKEGSGGNI 1201


>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
            protein F52C9.1b protein.
          Length = 1331

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 260  HVWPVHGTQLPGNMEWSSLFDCGGHL 183
            HVW    T L   MEW S    GG++
Sbjct: 1176 HVWDPFRTTLLAQMEWDSKEGSGGNI 1201


>AF068717-4|AAC17764.2|  357|Caenorhabditis elegans Serpentine
           receptor, class w protein144 protein.
          Length = 357

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 261 PCLASSWYSTPWKHGVVLVVR 199
           PCL S WY   +   V+LVV+
Sbjct: 101 PCLQSKWYLDVYSEKVLLVVK 121


>AF036695-3|ABD63231.1|  193|Caenorhabditis elegans Hypothetical
          protein F16B3.3 protein.
          Length = 193

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -1

Query: 65 HAI-CISNLNDFFYTKWMHFTL 3
          HAI C S  NDF   +W HF L
Sbjct: 27 HAIKCYSCANDFIVWQWRHFFL 48


>Z77133-2|CAB00864.2|  664|Caenorhabditis elegans Hypothetical
           protein K03A11.4 protein.
          Length = 664

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 240 TMNWPDMGQFXNPP 281
           TMNWP+   F NPP
Sbjct: 311 TMNWPNCVGFENPP 324


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,333,739
Number of Sequences: 27780
Number of extensions: 196912
Number of successful extensions: 487
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)