Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2021
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    29   0.54 
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   2.2  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   2.9  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    27   3.8  

>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -1

Query: 273 NSSVGLNGSGSRSILGPDGSCKLTTFITLIG*ADPE 166
           N +VGL+ S   +ILGP+G+ K T    LIG   P+
Sbjct: 711 NVTVGLSLSSRVAILGPNGAGKSTLIKVLIGEVIPQ 746


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 88  STEFSVHRAPDTRVTAVIPPNVSCYGTP 5
           S+ ++ HR+ D++  + +PPNV    +P
Sbjct: 122 SSNYAHHRSADSQTKSALPPNVPASSSP 149


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 97  TKVSTEFSVHRAPDTRVTAVIPP 29
           +  STE S H    T +T+++PP
Sbjct: 50  SSASTETSTHSVTSTNITSIVPP 72


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +3

Query: 36   ITAV--TRVSGALCT-LNSVLTFVMIMYVY*VVQFLFSTRILTTQPVPDQLXR 185
            ITAV  T +S    T  +SVLT V +++V  ++  L +  + T  P P+ L R
Sbjct: 948  ITAVFLTIISAVASTDQSSVLTAVQLLWVNLIMDTLAALALATDPPTPEVLKR 1000


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,396
Number of Sequences: 5004
Number of extensions: 54340
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)