Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2021
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0103 + 16678371-16678577,16678750-16679517                       31   1.3  
03_01_0480 - 3676529-3676687,3676767-3676931,3677044-3677220,367...    30   2.3  
09_01_0089 - 1271893-1272519                                           29   5.2  
02_03_0176 + 16010806-16011095,16011983-16012061,16012389-160124...    28   6.9  
12_01_0569 - 4652293-4652714,4652802-4652964,4653051-4653236,465...    28   9.1  

>06_03_0103 + 16678371-16678577,16678750-16679517
          Length = 324

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +2

Query: 485 KTDLGERCPGAGDVLHNVLQMLVRDAXLLGRVPSSPVT 598
           K  L   CPG      +VL ++ RDA +L R PS PVT
Sbjct: 105 KARLETACPGTVSCA-DVLALMARDAVVLARGPSWPVT 141


>03_01_0480 -
           3676529-3676687,3676767-3676931,3677044-3677220,
           3678170-3678273,3678700-3678843,3679831-3679898,
           3680059-3680162,3680759-3680767,3681572-3681657,
           3681918-3683373
          Length = 823

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 462 VKHYACLLKQIWVKGVLEQAMSYIMFFKC 548
           +KHY C++  +   G+L++A  +I   KC
Sbjct: 384 IKHYGCMVDMLGRAGLLKEAFEFIDTMKC 412


>09_01_0089 - 1271893-1272519
          Length = 208

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = +2

Query: 518 GDVLHNVLQMLVRDAXLLGRVPSSPVTPTARA 613
           G V     QML RDA LLGR P++  T T RA
Sbjct: 167 GGVAARADQML-RDALLLGRRPNTTTTTTTRA 197


>02_03_0176 +
           16010806-16011095,16011983-16012061,16012389-16012464,
           16012541-16012630,16012878-16013031,16013172-16013181,
           16013240-16013407,16014087-16014485,16014580-16014990
          Length = 558

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +3

Query: 228 PVWSGYRYHSVQQNYYGVTHYPGRHRLLHRLVTQRRNCQPVFRQNQGYGPERMFLYF*NG 407
           P  SGY +    Q+      YPG+ RL+ +++ +R N           GPE   +Y   G
Sbjct: 378 PNRSGYNFFFQDQHRKLKPEYPGQDRLISKMIGERWN---------NLGPEDKAVYQEKG 428

Query: 408 VKENSIY 428
           V++ + Y
Sbjct: 429 VEDKARY 435


>12_01_0569 -
           4652293-4652714,4652802-4652964,4653051-4653236,
           4653353-4653565
          Length = 327

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 20/76 (26%), Positives = 36/76 (47%)
 Frame = +2

Query: 383 DVSVFLKWCEREFDLPNFDMDLFQMNGKALCLLTKTDLGERCPGAGDVLHNVLQMLVRDA 562
           D SV ++    + ++ N       + G+A+    K +L ++CPG      +++ +  RDA
Sbjct: 74  DASVLIRSARNDAEVNNNKHQ--GLRGQAVVDAAKAELEDQCPGVVSCA-DIIALAARDA 130

Query: 563 XLLGRVPSSPVTPTAR 610
             +   PS  V PT R
Sbjct: 131 IAMTGGPSFDV-PTGR 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,780,986
Number of Sequences: 37544
Number of extensions: 385418
Number of successful extensions: 1148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)