Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2019
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0554 - 17075142-17075159,17075788-17076591,17076619-170767...    29   3.9  
02_01_0449 - 3229260-3229365,3230264-3230396,3230536-3230625,323...    28   9.1  

>04_03_0554 -
           17075142-17075159,17075788-17076591,17076619-17076719,
           17077095-17077751,17077827-17078768,17078837-17078896,
           17079131-17079763,17079886-17079942,17080177-17080702
          Length = 1265

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 653 HAYXXLINNKFYXYTHTQRYD 715
           HA+  LI  K Y YTH+++YD
Sbjct: 928 HAHFLLIMTKKYKYTHSKQYD 948


>02_01_0449 -
           3229260-3229365,3230264-3230396,3230536-3230625,
           3231097-3231309,3232317-3232407,3232519-3232707,
           3232810-3232920,3233018-3233110
          Length = 341

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +1

Query: 40  KMYFMLIYETVNDDERDTSERSRKNARTRLSVTFGRTRRFDVFAVCARAFRILYI 204
           KM  + ++ TV D ERDT E+ R           G T   D     ARA+R+ Y+
Sbjct: 237 KMEVVPVFITV-DPERDTVEQVRDYVNEFHPNLIGLTGTTDEIRKVARAYRVYYM 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,843,793
Number of Sequences: 37544
Number of extensions: 173254
Number of successful extensions: 384
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)