Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2019
         (750 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic acetylch...    25   2.5  
AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    24   5.8  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            24   5.8  

>AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 5 protein.
          Length = 533

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 260 FICLLLYILRFEISNIIIFMYKMRNARAH 174
           F C++  +    +S I+I  Y  RNA  H
Sbjct: 313 FNCIMFMVASSVVSTILILNYHHRNADTH 341


>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 260 FICLLLYILRFEISNIIIFMYKMRNARAH 174
           F C++  +    +S I+I  Y  RN+  H
Sbjct: 281 FNCIMFMVASSVVSTILILNYHHRNSDTH 309


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 675 IINFTFTHIHNVMILR 722
           I N TF H+H + ILR
Sbjct: 879 IANHTFDHLHGLKILR 894


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 553,913
Number of Sequences: 2352
Number of extensions: 7219
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 77339358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)