Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2018
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   5.5  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    22   5.5  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   7.3  

>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 298 YQRWQSVHLDKKFLL 342
           ++ WQ +HL+KK +L
Sbjct: 534 HRPWQQLHLNKKQIL 548



 Score = 21.4 bits (43), Expect = 7.3
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 299 IKGGNLCIWTKNF 337
           I GG  C+W++ F
Sbjct: 547 ILGGEACLWSEQF 559


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 15/57 (26%), Positives = 22/57 (38%)
 Frame = -1

Query: 643 NVQSPFTRHIRHMLLRIYERRCDDLSLESTSIKAGNLTFGQ*LVNQKNELLTLYSIG 473
           N+      HI +  L +Y      +  E   I+ GN    + L      L T+ SIG
Sbjct: 47  NIDPNICTHINYAFLGVYPNGTLQMIDEWGDIEKGNFAEVEALKEINPNLKTIISIG 103


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 430 VNY*PLFNAGFEPYSL 383
           +NY P  + GF PY +
Sbjct: 330 LNYVPHISTGFSPYEI 345


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,695
Number of Sequences: 336
Number of extensions: 2688
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)