Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2015
         (620 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    24   0.89 
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    23   1.6  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   4.8  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   6.3  

>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 2/109 (1%)
 Frame = -3

Query: 531 PSKNFXISLXLTVVDCWMRAAELETSSKELXSMINSSFCLGELTTVTPG--AIFTLLMYL 358
           P     IS  + +VD   + A L     +   MIN +FC+ +L  +T    +I T L  +
Sbjct: 248 PKSMLAISDPVFIVD---QVAALHIKLTDTAHMINYAFCVQQLLRITVAFISIVTALFLV 304

Query: 357 SPKKLRISIIELPSVVTQLMGK*AYTARILYXKPLVTPLIMFSTCEQTV 211
           +    + S  E     TQL     + A     + +    I   TCE+ V
Sbjct: 305 AINFNKSSSEENEGKTTQLDYFFTFWAFSNACEVMAIVWITSETCEEIV 353


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
 Frame = -3

Query: 531 PSKNFXISLXLTVVDCWMRAAELETSSKELXSMINSSFCLGELTTVTPG--AIFTLLMYL 358
           P     IS  + +VD   + A L     +   MIN +FC+ +L  +T    +I T L  +
Sbjct: 248 PKSMLAISDPVFIVD---QVAALHIKLTDTAHMINYAFCVQQLLRITVAFISIVTALFLV 304

Query: 357 SPKKLRISIIELPSVVTQL 301
           +    + S  E     TQL
Sbjct: 305 AINFNKSSSEENEGKTTQL 323


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = -3

Query: 243 LIMFSTCEQTVXXAASSFLD---PNHXSTFRXXGFTXRMSTAKCLKF 112
           L+MFS  +  V    + +L    PN  + F    +T +    KC+K+
Sbjct: 11  LLMFSYTDN-VSSTRTKYLRTNFPNFYNDFEVQRYTWKCENQKCVKY 56


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 443 NSLEDVSSSAALIQQSTTVKXXDIXKFLDGLY 538
           N+L    S+ AL+      K   I +FL G+Y
Sbjct: 94  NTLNTCRSALALLLSPEVGKDHRIKRFLRGVY 125


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,263
Number of Sequences: 336
Number of extensions: 1844
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)