Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2015
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   191   4e-49
09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    189   1e-48

>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  191 bits (465), Expect = 4e-49
 Identities = 94/177 (53%), Positives = 120/177 (67%), Gaps = 3/177 (1%)
 Frame = +2

Query: 47  GLTXHVKXXLATXKGPXGVLKXNFKHLAVDIRXVNPX---LLXVDXWFGSKKELAAXXTV 217
           G+T HV   + T +GP G L  NFKHL +D + +       L VD WFG+++ +AA  T 
Sbjct: 6   GVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMAAIRTA 65

Query: 218 CSHVENMIKGVTKGXQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGDKYIRRVKMAPGVT 397
            SHV+N+I GVTKG +YKMR VYAHFPIN   T  N+ IEIRNFLG+K +R+V M  GVT
Sbjct: 66  ISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVT 125

Query: 398 VVNSPKQKDELIIEXNSLEDVSSSAALIQQSTTVKXXDIXKFLDGLYVSEKTTVVLD 568
           ++ S K KDEL+++ N +E VS SAALI Q   VK  DI KFLDG+YVS+K T+  D
Sbjct: 126 ILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTITED 182


>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  189 bits (461), Expect = 1e-48
 Identities = 93/175 (53%), Positives = 119/175 (68%), Gaps = 1/175 (0%)
 Frame = +2

Query: 47  GLTXHVKXXLATXKGPXGVLKXNFKHLAVDIRXVNPXL-LXVDXWFGSKKELAAXXTVCS 223
           G+T  V   + T +GP G L  NFKHL +D + +     L VD WFG+++ +AA  T  S
Sbjct: 15  GVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWFGTRRTMAAIRTAIS 74

Query: 224 HVENMIKGVTKGXQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGDKYIRRVKMAPGVTVV 403
           HV+N+I GVTKG +YKMR VYAHFPIN   T  N+ IEIRNFLG+K +R+V M  GVT++
Sbjct: 75  HVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTIL 134

Query: 404 NSPKQKDELIIEXNSLEDVSSSAALIQQSTTVKXXDIXKFLDGLYVSEKTTVVLD 568
            S K KDEL+++ N +E VS SAALI Q   VK  DI KFLDG+YVS+K T+  D
Sbjct: 135 RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTITED 189


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,718,951
Number of Sequences: 37544
Number of extensions: 203223
Number of successful extensions: 335
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)