Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2015
         (620 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   201   4e-52
AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z47075-5|CAA87378.1|  402|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  201 bits (490), Expect = 4e-52
 Identities = 94/175 (53%), Positives = 122/175 (69%)
 Frame = +2

Query: 47  GLTXHVKXXLATXKGPXGVLKXNFKHLAVDIRXVNPXLLXVDXWFGSKKELAAXXTVCSH 226
           G+T  VK  +    GP G ++ +F+HL +++  +    L V  WFG +KELAA  TVCSH
Sbjct: 15  GVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFGVRKELAAIRTVCSH 74

Query: 227 VENMIKGVTKGXQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGDKYIRRVKMAPGVTVVN 406
           ++NMIKGVT G +YKMR+VYAHFPIN    +GN  +EIRNFLG+K +RRV +  GV    
Sbjct: 75  IKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATI 134

Query: 407 SPKQKDELIIEXNSLEDVSSSAALIQQSTTVKXXDIXKFLDGLYVSEKTTVVLDD 571
           S  QKDE+++E N ++ VS +AA IQQST VK  DI KFLDG+YVSEKTT+V  D
Sbjct: 135 STAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFLDGIYVSEKTTIVPTD 189


>AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical
           protein F35B3.3 protein.
          Length = 113

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = -2

Query: 562 HNSCFLRYIKTIQELXDIXXLDCSRLLDESSRARDIFQ 449
           +N+C LR IK +  L  +  L+ SRL +  SR RD+F+
Sbjct: 25  NNNCKLRQIKPVPNLTRL--LEESRLTNSLSRLRDVFK 60


>Z47075-5|CAA87378.1|  402|Caenorhabditis elegans Hypothetical
           protein E02H1.3 protein.
          Length = 402

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -3

Query: 429 NSSFCLGELTTVTPGAIFTLLMYLSPKKLRISII-ELPSVVTQLMGK*AYTARILYXKPL 253
           N  + + ELT    G ++ ++ Y+      I    E PS+++QL+    Y +R  Y    
Sbjct: 229 NDMYSMVELTVSGSGFLWHMIRYIVTILQEIGRENEQPSLISQLLDLKKYPSRPQYTLAS 288

Query: 252 VTPLIMF 232
            TPL +F
Sbjct: 289 DTPLCLF 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,896,463
Number of Sequences: 27780
Number of extensions: 178291
Number of successful extensions: 314
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)