Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2013
(530 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 176 1e-44
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390... 160 7e-40
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337... 158 2e-39
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978 88 4e-18
03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372 38 0.007
03_01_0404 + 3138624-3140096 31 0.58
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 29 2.3
01_07_0179 - 41814886-41815074,41815172-41815222,41815365-418154... 29 2.3
03_06_0379 + 33505242-33505347,33505474-33505631,33506127-335061... 28 4.1
04_04_0883 + 29079315-29079715,29080918-29081038,29081127-290812... 28 5.4
02_05_1211 + 34956601-34956850,34956950-34957102,34957562-349576... 28 5.4
11_01_0729 + 6032566-6032769,6033942-6034091,6034343-6034531,603... 27 9.4
>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
Length = 148
Score = 176 bits (428), Expect = 1e-44
Identities = 74/111 (66%), Positives = 98/111 (88%)
Frame = +2
Query: 92 RLCSAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPXQYKIPDWFL 271
++ A+T+IKG+GRR+SNI KKADID++KRAGE T EE+E+++T+++NP Q+K+PDWFL
Sbjct: 21 KIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEELERLMTVVANPRQFKVPDWFL 80
Query: 272 NRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 424
NR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 81 NRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 131
Score = 41.9 bits (94), Expect = 3e-04
Identities = 15/22 (68%), Positives = 21/22 (95%)
Frame = +1
Query: 37 DKFQHILRIMNTNIDGKRKVMF 102
+ FQHILR++NTN+DGK+K+MF
Sbjct: 3 EDFQHILRLLNTNVDGKQKIMF 24
>07_01_0525 +
3904388-3904390,3904485-3904645,3905347-3905394,
3905714-3905902,3906872-3906977
Length = 168
Score = 160 bits (388), Expect = 7e-40
Identities = 75/127 (59%), Positives = 98/127 (77%), Gaps = 16/127 (12%)
Frame = +2
Query: 92 RLCSAMTAIKGVGRRYSNIVLKKADIDLDKR----------------AGECTEEEVEKII 223
++ A+T+IKGVGRR+SNI KKADID++KR AGE T EE+E+++
Sbjct: 25 KIMFALTSIKGVGRRFSNIACKKADIDMNKRSGVVCYYLAVHNYVEWAGELTPEELERLM 84
Query: 224 TIMSNPXQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWG 403
T+++NP Q+K+PDWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWG
Sbjct: 85 TVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWG 144
Query: 404 LRVRGQH 424
LRVRGQH
Sbjct: 145 LRVRGQH 151
Score = 47.2 bits (107), Expect = 8e-06
Identities = 18/28 (64%), Positives = 25/28 (89%)
Frame = +1
Query: 19 MSLVIPDKFQHILRIMNTNIDGKRKVMF 102
MSL+ + FQHILR++NTN+DGK+K+MF
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMF 28
>03_06_0283 -
32832572-32832677,32833343-32833531,32833582-32833796,
32833900-32833902
Length = 170
Score = 158 bits (384), Expect = 2e-39
Identities = 75/129 (58%), Positives = 98/129 (75%), Gaps = 18/129 (13%)
Frame = +2
Query: 92 RLCSAMTAIKGVGRRYSNIVLKKADIDLDKR------------------AGECTEEEVEK 217
++ A+T+IKGVGRR+SNI KKADID++KR AGE T EE+E+
Sbjct: 25 KIMFALTSIKGVGRRFSNIACKKADIDMNKRQEPPPPPSRRQISVMVGGAGELTPEELER 84
Query: 218 IITIMSNPXQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHY 397
++T+++NP Q+K+PDWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHY
Sbjct: 85 LMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHY 144
Query: 398 WGLRVRGQH 424
WGLRVRGQH
Sbjct: 145 WGLRVRGQH 153
Score = 47.2 bits (107), Expect = 8e-06
Identities = 18/28 (64%), Positives = 25/28 (89%)
Frame = +1
Query: 19 MSLVIPDKFQHILRIMNTNIDGKRKVMF 102
MSL+ + FQHILR++NTN+DGK+K+MF
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMF 28
>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
Length = 78
Score = 88.2 bits (209), Expect = 4e-18
Identities = 39/55 (70%), Positives = 46/55 (83%), Gaps = 1/55 (1%)
Frame = +2
Query: 263 WFL-NRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 424
W L R+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 7 WILPERKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 61
>03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372
Length = 161
Score = 37.5 bits (83), Expect = 0.007
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = +2
Query: 341 REDLERLKKIRAHRGMRHYWGLRVRGQ 421
R +ERLK+IR +RG+RH GL VRGQ
Sbjct: 108 RVAIERLKEIRCYRGIRHKLGLPVRGQ 134
>03_01_0404 + 3138624-3140096
Length = 490
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 293 DGKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 391
+G Y QL++ LDS ++D R++K+ RG+R
Sbjct: 403 EGVYVQLSNIYLDSNRKDDARRVRKLIGSRGIR 435
>10_07_0063 -
12502305-12503361,12503567-12503668,12504251-12504378,
12504653-12504764,12504876-12504927,12505260-12505517,
12505943-12506079,12506296-12506606
Length = 718
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 354 RGSRRFALTEGCDITGAFVCVVSTLRLLAGEEELLVY 464
RG + L C+++ F+C +STL + ELL++
Sbjct: 184 RGQIEYELYPLCNLSFFFICYLSTLLIFCNANELLLF 220
>01_07_0179 -
41814886-41815074,41815172-41815222,41815365-41815469,
41815852-41815945,41816056-41816150,41816581-41816700,
41816737-41816832,41817272-41817569,41817777-41817853,
41818932-41819447
Length = 546
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 351 WRGSRRFALTEGCDITGAFVCVVSTLRLLAGEEELL 458
W+ FA+ G D+ F+ + T LLA EE LL
Sbjct: 212 WQEESCFAIGAGTDVANLFISIKRTQLLLATEEWLL 247
>03_06_0379 +
33505242-33505347,33505474-33505631,33506127-33506174,
33506851-33506919
Length = 126
Score = 28.3 bits (60), Expect = 4.1
Identities = 21/110 (19%), Positives = 44/110 (40%)
Frame = +2
Query: 29 SFQTNFNIFFVS*IRTSMANARLCSAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEE 208
S + F+ +FV+ R +A + + + ++ G RY ++ K D+D+ + E
Sbjct: 3 SMLSAFSQWFVNPRRNPLARLHMQAISSRLRKYGLRYDDLYDPKHDLDIKEALERLPREV 62
Query: 209 VEKIITIMSNPXQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLER 358
V+ + + +L+ + S +D +E LER
Sbjct: 63 VDARHQRLKRAMDLSMKHQYLSENDQAQQTPFRGYLSDMMDLVKKERLER 112
>04_04_0883 +
29079315-29079715,29080918-29081038,29081127-29081246,
29081646-29081876,29081951-29082517
Length = 479
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 194 CTEEEVEKIITIMSNPXQYKIPDWFLNRQKDIVDGK-YSQLTSSNL 328
C EE ++ M P + + DW +N D+V+ + Y+++ + N+
Sbjct: 236 CNTEEDCALLASMLPPVEAALLDWAINLMADVVEHENYNKMNARNI 281
>02_05_1211 +
34956601-34956850,34956950-34957102,34957562-34957674,
34958092-34958198,34958289-34958404,34958502-34958577,
34958652-34958693,34958809-34958917,34959102-34959199,
34959297-34959390,34959517-34959642
Length = 427
Score = 27.9 bits (59), Expect = 5.4
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = +2
Query: 161 ADIDLDKRAGECTEEEVEKIITIMSNPXQYKIPDWFLNRQKDIVDGKYSQLTSSNLDS-- 334
+ +DLD R+G T V K T+ NP + ++ + + KD Y +LT+ N ++
Sbjct: 190 SSVDLDIRSGSNTRHVVLKRQTVTLNPVRSRMCE--IPGAKDNSKVGYIKLTTFNQNAAG 247
Query: 335 KLREDLERLKK 367
++E L++L++
Sbjct: 248 SVKEALQKLRE 258
>11_01_0729 +
6032566-6032769,6033942-6034091,6034343-6034531,
6034660-6034776,6034871-6035031,6035131-6035371
Length = 353
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 28 VIPDKFQHILRIMNTNIDGKRKVMFGDD 111
++ ++ + R+MN N D +R+ MFGDD
Sbjct: 254 LLDKNYRELARLMNRNFDLRRQ-MFGDD 280
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,878,751
Number of Sequences: 37544
Number of extensions: 256664
Number of successful extensions: 710
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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