Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2013
(530 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-11|CAB16517.1| 154|Caenorhabditis elegans Hypothetical p... 177 5e-45
Z81457-5|CAB03817.2| 584|Caenorhabditis elegans Hypothetical pr... 31 0.68
U50069-7|AAB37561.1| 913|Caenorhabditis elegans Hypothetical pr... 29 2.7
U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human nie... 27 6.3
AF000261-3|AAB52924.1| 464|Caenorhabditis elegans Hypothetical ... 27 6.3
Z73899-2|CAA98074.1| 536|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z54342-16|CAA91156.1| 755|Caenorhabditis elegans Hypothetical p... 27 8.4
Z47072-4|CAA87370.1| 755|Caenorhabditis elegans Hypothetical pr... 27 8.4
>Z99281-11|CAB16517.1| 154|Caenorhabditis elegans Hypothetical
protein Y57G11C.16 protein.
Length = 154
Score = 177 bits (430), Expect = 5e-45
Identities = 78/113 (69%), Positives = 97/113 (85%)
Frame = +2
Query: 86 NARLCSAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPXQYKIPDW 265
N ++ A+TAIKGVGRR++ + +KAD+D++KRAGE TEE+ +KI+TIM NP QYKIP+W
Sbjct: 23 NRKVPYALTAIKGVGRRFAFVCCRKADVDVNKRAGELTEEDFDKIVTIMQNPSQYKIPNW 82
Query: 266 FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 424
FLNRQKDI DGK QL S+ +D+KLREDLER+KKIR HRG+RHYWGLRVRGQH
Sbjct: 83 FLNRQKDIKDGKTGQLLSTAVDNKLREDLERMKKIRLHRGLRHYWGLRVRGQH 135
Score = 50.4 bits (115), Expect = 8e-07
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = +1
Query: 19 MSLVIPDKFQHILRIMNTNIDGKRKVMF 102
MSL+IP+KFQHI R+MNTNIDG RKV +
Sbjct: 1 MSLIIPEKFQHIHRVMNTNIDGNRKVPY 28
>Z81457-5|CAB03817.2| 584|Caenorhabditis elegans Hypothetical
protein C01G12.7 protein.
Length = 584
Score = 30.7 bits (66), Expect = 0.68
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +3
Query: 342 VKIWRGSRRFALTEGCDITGAFVCVVSTLRLLAGEEELLVYQRRS 476
+K +R + AL +TGA + + +TL LLA LL QR S
Sbjct: 137 IKKYRWGMKMALLFHLCVTGALLSITNTLHLLASGYHLLKRQRNS 181
>U50069-7|AAB37561.1| 913|Caenorhabditis elegans Hypothetical
protein C09B9.7 protein.
Length = 913
Score = 28.7 bits (61), Expect = 2.7
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 224 TIMSNPXQYKIPDWFLNRQK-DIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYW 400
+I NP + + LNR D KY SS+++ ++ DLE+LKKI + ++ Y
Sbjct: 111 SIRDNPVSQSLANILLNRDTAPYYDYKY---LSSDIELMVK-DLEKLKKINKEKTLKMY- 165
Query: 401 GLRVRG 418
GL G
Sbjct: 166 GLLAHG 171
>U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human
niemann pick c disease)related protein 1 protein.
Length = 1383
Score = 27.5 bits (58), Expect = 6.3
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = -3
Query: 189 PARLSRSMSAFLRTMLEYLRPTPLIAVIAEH-NLAFAIDVRIHDTKNMLKFVWNDQR 22
PA S S+ + P I + LA IDV +H T + FVW+ QR
Sbjct: 748 PAMFSSSLGCAFSFFIGGFTDLPAIRTFCLYAGLAVLIDVVLHCTIFLALFVWDTQR 804
>AF000261-3|AAB52924.1| 464|Caenorhabditis elegans Hypothetical
protein F19B10.4 protein.
Length = 464
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 68 IRTSMANARLCSAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 217
I S+ ++ CS TA K YS + D D DK E + E++++
Sbjct: 376 IPASLTDSGCCSMDTAEKVHDEEYSELSDFDEDFDFDKDLAELSNEDLDE 425
>Z73899-2|CAA98074.1| 536|Caenorhabditis elegans Hypothetical
protein ZK829.4 protein.
Length = 536
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +2
Query: 236 NPXQYKIPDWFLNRQKDIVDGKYS-QLTSSNLDSKLREDL 352
NP YK+ D++ N+ +++ K + +L S++L K +++L
Sbjct: 40 NPSFYKMVDFYFNKGAEVIAPKLAEELKSNSLSQKDKKNL 79
>Z54342-16|CAA91156.1| 755|Caenorhabditis elegans Hypothetical
protein F26C11.1 protein.
Length = 755
Score = 27.1 bits (57), Expect = 8.4
Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Frame = +2
Query: 29 SFQTNFNIFFVS*IRTSMANARLCSAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEE 208
S++ NF + +++++ ARLC + G R +V KK + ++ + T+++
Sbjct: 197 SWEVNFTYKEDNRVKSTLVKARLCPKCSEKLNYGTRKRQVVQKKRAVRKWEKERKRTKKD 256
Query: 209 VEKIITIMSNPXQYKIPDW-------FLNRQKDIVDGKYSQLTSSNLDSKLREDLERL 361
E+ + N + K + L+ DI +G T +D ++ E L+ L
Sbjct: 257 EEEDDDVELNQHEAKNQETKVQPSTSTLSASTDIWEGPPPAETEKTVDDEIDEFLDDL 314
>Z47072-4|CAA87370.1| 755|Caenorhabditis elegans Hypothetical
protein F26C11.1 protein.
Length = 755
Score = 27.1 bits (57), Expect = 8.4
Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Frame = +2
Query: 29 SFQTNFNIFFVS*IRTSMANARLCSAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEE 208
S++ NF + +++++ ARLC + G R +V KK + ++ + T+++
Sbjct: 197 SWEVNFTYKEDNRVKSTLVKARLCPKCSEKLNYGTRKRQVVQKKRAVRKWEKERKRTKKD 256
Query: 209 VEKIITIMSNPXQYKIPDW-------FLNRQKDIVDGKYSQLTSSNLDSKLREDLERL 361
E+ + N + K + L+ DI +G T +D ++ E L+ L
Sbjct: 257 EEEDDDVELNQHEAKNQETKVQPSTSTLSASTDIWEGPPPAETEKTVDDEIDEFLDDL 314
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,934,441
Number of Sequences: 27780
Number of extensions: 221779
Number of successful extensions: 702
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -