Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2010
         (828 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.2  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    22   5.2  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   5.2  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   9.0  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    21   9.0  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 76   RRGRVGARACLRGRQVRRDPRDGLQH 153
            RRGR+G  A LR + V  D    ++H
Sbjct: 2122 RRGRIGPYAYLRDQWVSFDDIGMIRH 2147


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 451 LGGPGDQRRARVGDG 407
           LG PGD   A +G G
Sbjct: 149 LGSPGDASNASIGSG 163


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 451 LGGPGDQRRARVGDG 407
           LG PGD   A +G G
Sbjct: 305 LGSPGDASNASIGSG 319


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 664 GTSSAMKPDRHTVCPKLCHPGA 599
           GT+ +  P+R       CH GA
Sbjct: 176 GTTLSQSPNRRRASSNPCHNGA 197


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
 Frame = -1

Query: 615 CATREXVVRCLRA*SRFPAMVKVTRGRCGMRLQSTTYCP--KAMAVAPTAALRASTSLEG 442
           C T E ++RCL++       + V R +    L    + P   + A  P         ++ 
Sbjct: 248 CGTDETMIRCLKSRPARQIALTVPRYQAWWYLPFAQFGPVIDSWATQPVLPTHPYQIIKN 307

Query: 441 PAISDVP 421
             + DVP
Sbjct: 308 QLVYDVP 314


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,456
Number of Sequences: 336
Number of extensions: 3174
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22725411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)