Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2010
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   1.1  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    28   1.4  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   4.3  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   4.3  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    26   5.7  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   7.5  
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha...    26   7.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   7.5  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    26   7.5  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    25   9.9  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   9.9  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   9.9  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -1

Query: 198  ATMLSNTGVTWSTAIVLKAIPRIPSNLAATKASPGS--DTASANVWRRTLSPPTVTSSV 28
            +++ S T ++ S  +     P + S  + T +  GS  D+A+++ W    S   +TSSV
Sbjct: 883  SSLSSTTSLSTSIPVTSSVAPAVTSTGSETSSVVGSGTDSATSSSWTAETSSSAITSSV 941


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 489 PSPSGSTSWTAASYRTCRESPLPSPGNDFTL 581
           P PS ST+ T +SYR+   S  P+  + F L
Sbjct: 273 PKPSISTTTTGSSYRSAESSHAPTTPDHFKL 303


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 625 CPKLCHPGAXSSLPSSVKSFPGDGK 551
           CP LCHPG      ++V+ F   GK
Sbjct: 294 CPLLCHPGPCPPCTATVEKFCLCGK 318


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -1

Query: 180 TGVTWSTAIVLKAIPRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSS 31
           TG+TWST      +    +NL+A+K    S   SAN       PP   S+
Sbjct: 267 TGLTWSTKQDAVPLKTALANLSASKTQAPSSGDSANGGLPPPPPPPPPSN 316


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 115 GHEGKPGLRHGLGERL 68
           G EGKPG+  G+GE L
Sbjct: 72  GTEGKPGVSRGVGEEL 87


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/52 (23%), Positives = 21/52 (40%)
 Frame = -3

Query: 607 PGAXSSLPSSVKSFPGDGKGDSRQVRYEAAVHDVLPEGDGRGAHRRVEGFHL 452
           P    S+P  +  FPG        ++ E AV +  P+ + R   +     H+
Sbjct: 500 PPTTQSIPLKMAGFPGGVNSSLTDIKEEEAVSENAPQQEERSFEQIKTSIHI 551


>SPBC30B4.08 |eri1||double-strand siRNA
           ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +1

Query: 640 PASWRWTCPNPW 675
           P +W W C  PW
Sbjct: 194 PKNWAWACDGPW 205


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = -1

Query: 219 TGCTSP*ATMLSNTGVTW--STAIVLKAIPRIPS--NLAATKASPGSDTASANVWRRTLS 52
           T  TSP +T  S+T V+W  +T I   +  ++ S  ++  T  +  S T +++    T S
Sbjct: 602 TPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSS 661

Query: 51  PPTVTSS 31
             T TSS
Sbjct: 662 SSTATSS 668


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 138 PRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSV 28
           PR+    A++K +  S TAS      ++SP +  SSV
Sbjct: 96  PRLSKPYASSKLAASSRTASYQAMSYSVSPTSTNSSV 132


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 290 PAHYRGDLVRVPLLRDTYWEFHMD--SVNVNASRFCAQGCSAIADTGTSLI 436
           P    G    + L+ D YW  H+D  SV +  +   A+ C AI  T  +++
Sbjct: 264 PVFALGRAQELLLILDEYWNNHLDLRSVPIYYASSLARKCMAIFQTYVNMM 314


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = -1

Query: 219 TGCTSP*ATMLSNTGVTWSTAIVLKAIPRIPSNLAATKASPGSDTASANVWRRTLSPPTV 40
           T  TS  +T L++   T ST++   A     S++  T +   +  +SAN    T +  T 
Sbjct: 381 TSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTP 440

Query: 39  TSSV 28
            SSV
Sbjct: 441 LSSV 444


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 664 GTSSAMKPDRHTVCPKLC 611
           G+S+   P+ HT+C KLC
Sbjct: 732 GSSNINFPNSHTLCQKLC 749


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,751,598
Number of Sequences: 5004
Number of extensions: 48525
Number of successful extensions: 149
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)