Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2009
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-13|AAC48300.1|  439|Caenorhabditis elegans Mechanosensory...   147   8e-36
Z71181-2|CAA94895.1|  301|Caenorhabditis elegans Hypothetical pr...    40   0.001
U50068-4|AAB37733.1|  287|Caenorhabditis elegans Hypothetical pr...    40   0.002
U21324-6|AAA62562.1|  287|Caenorhabditis elegans Hypothetical pr...    34   0.094
U55368-5|AAA97992.2|  333|Caenorhabditis elegans Hypothetical pr...    34   0.12 
Z81088-3|CAB03128.1|  283|Caenorhabditis elegans Hypothetical pr...    32   0.38 
Z81088-2|CAB03127.1|  297|Caenorhabditis elegans Hypothetical pr...    32   0.38 
Z81549-6|CAB04475.1|  523|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>U00033-13|AAC48300.1|  439|Caenorhabditis elegans Mechanosensory
           abnormality protein14 protein.
          Length = 439

 Score =  147 bits (356), Expect = 8e-36
 Identities = 68/163 (41%), Positives = 104/163 (63%), Gaps = 2/163 (1%)
 Frame = +1

Query: 28  MRYNELGTTGIKVSHISVGSAAFSNIYGKYDEKRSLELIKESLNLGINYLETGPWYGQGS 207
           M Y ++  T I++S I  G+AA   ++G  ++   +++++ ++  GINY++TG WY Q  
Sbjct: 83  MNYRQIPGTDIRMSKIGFGAAAIGGMFGNVEDS-IIKIVETAIKQGINYIDTGYWYSQSR 141

Query: 208 SEKVIGKALVGVPRDSYYIGSKVGRYDKDTLKMFDFSAEKTAAGLDNTLSLLGLDYVDL- 384
           SE ++GKAL  +PR +YYI +KVGR++ D  + FDF A+K    L N+L  L L Y+D+ 
Sbjct: 142 SESILGKALSKIPRKAYYISTKVGRFELDYARTFDFRADKILESLTNSLKRLQLTYIDIC 201

Query: 385 -IQVHDITFAPDTSVVLKETLPVLEQAVRDGKARFIGIADYDI 510
            +Q+HD  FAP+ S+VL ETL  LE A   GK R IG+  Y +
Sbjct: 202 YVQIHDADFAPNESIVLYETLQALEMAKSSGKIRHIGLTGYPL 244



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +3

Query: 636 VGVINAAATGMGLLTNKXPQPWHXXRDDXKAXCRXAS 746
           + VIN+ A   GLLT K P PWH   D+ K  C  A+
Sbjct: 272 IAVINSGALCWGLLTEKGPPPWHPASDEIKEACLAAT 308


>Z71181-2|CAA94895.1|  301|Caenorhabditis elegans Hypothetical
           protein K07C5.2 protein.
          Length = 301

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 14/145 (9%)
 Frame = +1

Query: 142 IKESLNLGINYLETGPWYGQGSSEKVIGKAL------VGVPRDSYYIGSKVGRYDKDTLK 303
           I+ +L  G    +T   Y    +E  +G +L       G+ R+  +I +KV   +++T+ 
Sbjct: 40  IEAALKSGYRQFDTANLY---KNETFLGNSLKKYLPQFGLTREDVFITTKVRTLNENTV- 95

Query: 304 MFDFSAEKTAAGLDNTLSLLGLDYVDLIQVH---DITFAPDTSVVL-----KETLPVLEQ 459
                 E+T   L N+L+ L  DYVDL+ +H   D     D    +     K     LE+
Sbjct: 96  ------EETEKQLANSLATLQTDYVDLLLIHYPRDRDTGNDDDYEINKSRRKIVWQTLEK 149

Query: 460 AVRDGKARFIGIADYDIDLMKEVVE 534
           A   G+ R IG+++Y++  + E+ E
Sbjct: 150 AKESGRVRSIGVSNYEVYHLVEMFE 174


>U50068-4|AAB37733.1|  287|Caenorhabditis elegans Hypothetical
           protein C01G5.5 protein.
          Length = 287

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 14/154 (9%)
 Frame = +1

Query: 109 GKYDEK--RSLELIKESLNLGINYLETGPWYGQGSSEKVIGKALVGV-PR-----DSYYI 264
           G Y+ K  +    + E+L +G    +T  +Y    +EK +G AL  + PR     +  Y+
Sbjct: 16  GTYEAKGDQLFAAVDEALKVGYRSFDTAKYY---ENEKDLGLALKTLLPRHNICSEDIYL 72

Query: 265 GSKVGRYDKDTLKMFDFSAEKTAAGLDNTLSLLGLDYVDLIQVH------DITFAPDTSV 426
            SKV  Y          +AE     ++ +L LL   Y+DL+ VH            +  +
Sbjct: 73  TSKVFPYSSKN------AAELIRKDVNESLELLDRKYLDLVLVHYPRPLDTEDLNENNKM 126

Query: 427 VLKETLPVLEQAVRDGKARFIGIADYDIDLMKEV 528
             K+T   LE+   +GK R IG+++Y+   ++E+
Sbjct: 127 YRKDTWIALEKLHAEGKIRSIGVSNYEPHHIEEM 160


>U21324-6|AAA62562.1|  287|Caenorhabditis elegans Hypothetical
           protein C35D10.6 protein.
          Length = 287

 Score = 34.3 bits (75), Expect = 0.094
 Identities = 30/143 (20%), Positives = 70/143 (48%), Gaps = 8/143 (5%)
 Frame = +1

Query: 136 ELIKESLNLGINYLETGPWYG-QGSSEKVIGKALV--GVPRDSYYIGSKVGRYDKDTLKM 306
           ++I      G  +++T   Y  +    +++ K L   G+ R+  +I SK        L  
Sbjct: 29  QVIDAGFKEGYRFIDTAQVYNNEAKIGRILEKLLPANGLKREDIWITSK--------LAP 80

Query: 307 FDFSAEKTAAGLDNTLSLLGLDYVDLIQVHDITFA-----PDTSVVLKETLPVLEQAVRD 471
            +   +K    ++ +LS L ++Y+DL+ +H    +     P    +  E+  V+ + + +
Sbjct: 81  SNAGVKKARESIEESLSNLKVEYLDLLLIHWPGSSLKSENPANKKLRVESWNVMCEMMAE 140

Query: 472 GKARFIGIADYDIDLMKEVVEES 540
           GK R +G+++++I  ++E+ ++S
Sbjct: 141 GKLRSVGVSNFEICHLEELKKDS 163


>U55368-5|AAA97992.2|  333|Caenorhabditis elegans Hypothetical
           protein T08H10.1 protein.
          Length = 333

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 36/166 (21%), Positives = 72/166 (43%), Gaps = 19/166 (11%)
 Frame = +1

Query: 118 DEKRSLELIKESLNLGINYLETGPWYGQGSSEKVIGKALVGVPRDSYYIGSKVGRYDKDT 297
           DE      ++ +L+ G   ++T   Y    +E +IGK L       Y    K+ R D   
Sbjct: 26  DEAELTVALRAALDAGYRLIDTAHLY---QNEHIIGKVL-----HEYISSGKLKREDIFV 77

Query: 298 LKMFDFSA---EKTAAGLDNTLSLLGLDYVDLIQVH--------DITFAP--------DT 420
                F+A   E     +++ L  L L+Y+DL  +H        + +FAP         T
Sbjct: 78  TSKLPFTAHAPEDVPKCVESQLKALQLEYIDLYLIHCPFPFKHQEGSFAPLMENGELAVT 137

Query: 421 SVVLKETLPVLEQAVRDGKARFIGIADYDIDLMKEVVEESGSQDIN 558
            +   +T   LE+  ++GK + +G++++  + ++ + + +  +  N
Sbjct: 138 EIAHIDTWRALEKLYKEGKLKALGVSNFSCNQLQALYDAAEVKPAN 183


>Z81088-3|CAB03128.1|  283|Caenorhabditis elegans Hypothetical
           protein F53F1.3 protein.
          Length = 283

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 8/140 (5%)
 Frame = +1

Query: 133 LELIKESLNLGINYLETGPWYGQGSSEKVIGKAL-VGVPRDSYYIGSKVGRYDKD-TLKM 306
           L ++  +L  G    +T   Y   ++EK IG AL + +P+ +      + R D   T KM
Sbjct: 27  LPVLDAALTAGYRLFDTAKVY---NNEKEIGDALEILLPKHN------LKREDIFITTKM 77

Query: 307 FDFSAEKTAAGLDNTLSLLGLDYVDLIQVH-DITFAPDTSVVLKETLPV-----LEQAVR 468
              + E     +D +LSLL   Y+D+  +H   +F       + +TL +     L +   
Sbjct: 78  HPNTVENVKKLVDESLSLLKTSYIDMYLIHYPKSFDYGDQDPMNKTLRIATWNDLWECKN 137

Query: 469 DGKARFIGIADYDIDLMKEV 528
            GK R +G++ ++I  ++E+
Sbjct: 138 AGKIRSVGVSSFEIRHLEEL 157


>Z81088-2|CAB03127.1|  297|Caenorhabditis elegans Hypothetical
           protein F53F1.2 protein.
          Length = 297

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 12/141 (8%)
 Frame = +1

Query: 142 IKESLNLGINYLETGPWYGQGSSEKVIGKALV------GVPRDSYYIGSKVGRYDKDTLK 303
           I  +L  G    +T  +Y    +EK +G+AL       G+ R   ++ SK     K+   
Sbjct: 40  IDAALTAGYRMFDTAKYY---LNEKELGEALKILLPKHGLSRSDVFLTSKFFPESKNC-- 94

Query: 304 MFDFSAEKTAAGLDNTLSLLGLDYVDLIQVH------DITFAPDTSVVLKETLPVLEQAV 465
                 E     ++ +L  L  DY+D+  VH            + +   K    VLE+A 
Sbjct: 95  -----REACRGFVEESLQSLQTDYIDMYLVHYPKPNDSDNDDVNNAEYRKIAYEVLEEAK 149

Query: 466 RDGKARFIGIADYDIDLMKEV 528
             GK R IG+++Y+I  ++E+
Sbjct: 150 AAGKVRSIGVSNYEIVHLEEL 170


>Z81549-6|CAB04475.1|  523|Caenorhabditis elegans Hypothetical
           protein F55C9.7 protein.
          Length = 523

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
 Frame = -1

Query: 231 SLPNDLFGAALTVPGSGFQIVDTEIQAFFNEFQASFLVIFPIDIAESGTSN---TNVRN- 64
           S+   L G A +     FQ  D  +Q   N+F  SFL +  +D+     +    TN RN 
Sbjct: 355 SIHEALDGVACSHTSLYFQSQDVWLQRIVNQFSGSFLYL-DLDVNSIWNNQIMCTNRRNL 413

Query: 63  -FNTGCTELV 37
             +T CTEL+
Sbjct: 414 YISTSCTELL 423


>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical
           protein C27B7.4 protein.
          Length = 1274

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 555 QPYSLISKSTLFDNRLQNYISFFKSXGVGVINAAATGMG 671
           QP+ L     ++DN +++   + KS G G I A + G+G
Sbjct: 257 QPHQLGGIRFMYDNTIESLGEYKKSDGFGCILAHSMGLG 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,775,569
Number of Sequences: 27780
Number of extensions: 312975
Number of successful extensions: 878
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)