Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2008
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0999 - 13105030-13105434,13105716-13105850,13105933-131061... 240 7e-64
03_02_0998 - 13097675-13098079,13098307-13098441,13098522-130987... 240 7e-64
03_02_1010 - 13194002-13194339,13194421-13194573,13194661-131948... 165 3e-41
07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732... 87 2e-21
04_04_0750 + 27763841-27763972,27764311-27764485,27764908-277649... 45 6e-05
07_01_0304 + 2177044-2177046,2177173-2177235,2177323-2177460,217... 42 5e-04
12_01_1116 + 11914352-11914415,11915049-11915158,11915254-119152... 33 0.18
02_02_0157 - 7280335-7280541,7280656-7280762,7280918-7281097,728... 31 0.98
11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502 30 1.7
11_06_0541 + 24771145-24775479 30 1.7
08_02_1154 - 24727668-24728275,24728503-24728844,24730216-24731119 28 6.9
06_03_1186 - 28260487-28262112,28262205-28262345,28262429-282625... 28 9.1
03_01_0311 + 2453057-2454610 28 9.1
>03_02_0999 -
13105030-13105434,13105716-13105850,13105933-13106133,
13106374-13106673,13106764-13106964,13107246-13107410,
13107484-13107663,13108171-13108212,13108327-13108404
Length = 568
Score = 240 bits (588), Expect = 7e-64
Identities = 122/250 (48%), Positives = 164/250 (65%), Gaps = 1/250 (0%)
Frame = +2
Query: 2 FNTPEGASTVVKLKNFVKFEDXXXXXXXXXXXIEGXXXXXXXXXXXXXXXXEVQDQLLVG 181
F T + A VV+LK F KFE+ I+ E L V
Sbjct: 32 FTTSDSARKVVELKAFNKFENTSDALSAATLIIDSKPTKGLRKFLQKHCEGET---LAVA 88
Query: 182 DSKLGSAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEMTAMALGLAHSLSRYK 361
DSKLG+AI+EK + C+ N+ V EL+R +R+Q+ L++GL +++ M+LGL+HSLSRYK
Sbjct: 89 DSKLGNAIKEKLKIDCLHNSAVMELMRGLRNQLTELISGLGAQDLGPMSLGLSHSLSRYK 148
Query: 362 LKFSPDKIDTMIVQAQCLLDDLDKELNNYIMRCREWYGWHFPELGKIITDNTLFVKVVKL 541
LKFSP+K+DTMI+QA LLDDLDKELN Y MR REWYGWHFPEL KI+ DN + KVVK+
Sbjct: 149 LKFSPEKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVADNIQYAKVVKM 208
Query: 542 IGTRDYASKTDLSDILPEDLXE-KVXGAAEISMGTEISEDDIMNIQNLXDEIIXITDYRT 718
+G R A D S+IL +D E ++ AA ISMGTE+SE D++NI+ L D+++ +++YR
Sbjct: 209 MGDRTNAESLDFSEILSDDEVEAQLKEAAVISMGTEVSELDLLNIRELCDQVLALSEYRA 268
Query: 719 HLTDYLXARM 748
L DYL +RM
Sbjct: 269 QLFDYLRSRM 278
>03_02_0998 -
13097675-13098079,13098307-13098441,13098522-13098722,
13099060-13099359,13099449-13099649,13099932-13100096,
13100170-13100349,13100896-13100937,13101040-13101117
Length = 568
Score = 240 bits (588), Expect = 7e-64
Identities = 122/250 (48%), Positives = 164/250 (65%), Gaps = 1/250 (0%)
Frame = +2
Query: 2 FNTPEGASTVVKLKNFVKFEDXXXXXXXXXXXIEGXXXXXXXXXXXXXXXXEVQDQLLVG 181
F T + A VV+LK F KFE+ I+ E L V
Sbjct: 32 FTTSDSARKVVELKAFNKFENTSDALSAATLIIDSKPTKGLRKFLQKHCEGET---LAVA 88
Query: 182 DSKLGSAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEMTAMALGLAHSLSRYK 361
DSKLG+AI+EK + C+ N+ V EL+R +R+Q+ L++GL +++ M+LGL+HSLSRYK
Sbjct: 89 DSKLGNAIKEKLKIDCLHNSAVMELMRGLRNQLTELISGLGAQDLGPMSLGLSHSLSRYK 148
Query: 362 LKFSPDKIDTMIVQAQCLLDDLDKELNNYIMRCREWYGWHFPELGKIITDNTLFVKVVKL 541
LKFSP+K+DTMI+QA LLDDLDKELN Y MR REWYGWHFPEL KI+ DN + KVVK+
Sbjct: 149 LKFSPEKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVADNIQYAKVVKM 208
Query: 542 IGTRDYASKTDLSDILPEDLXE-KVXGAAEISMGTEISEDDIMNIQNLXDEIIXITDYRT 718
+G R A D S+IL +D E ++ AA ISMGTE+SE D++NI+ L D+++ +++YR
Sbjct: 209 MGDRTNAESLDFSEILSDDEVEAQLKEAAVISMGTEVSELDLLNIRELCDQVLALSEYRA 268
Query: 719 HLTDYLXARM 748
L DYL +RM
Sbjct: 269 QLFDYLRSRM 278
>03_02_1010 -
13194002-13194339,13194421-13194573,13194661-13194809,
13194932-13195184,13195282-13195469,13195684-13195841,
13196093-13196307,13196410-13196614
Length = 552
Score = 165 bits (402), Expect = 3e-41
Identities = 80/195 (41%), Positives = 126/195 (64%), Gaps = 4/195 (2%)
Frame = +2
Query: 176 VGDSKLGSAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEMTAMALGLAHSLSR 355
V + K+GS I E + C SN VQELLR +R D ++ L K ++ LGL HS SR
Sbjct: 98 VVEPKVGSHISEVTGIPCQSNEFVQELLRGVRLHFDRFISELKKSDLEKAQLGLGHSYSR 157
Query: 356 YKLKFSPDKIDTMIVQAQCLLDDLDKELNNYIMRCREWYGWHFPELGKIITDNTLFVKVV 535
K+KF+ +++D M++QA LLD LDK++N++ MR REW+GWHFPEL KI+ DN ++ K+
Sbjct: 158 AKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWFGWHFPELVKIVNDNYIYAKLA 217
Query: 536 KLIGTRDYASKTDLS---DIL-PEDLXEKVXGAAEISMGTEISEDDIMNIQNLXDEIIXI 703
I + ++ D+S D++ ED ++V AA+ SMG ++SE D+MN++ ++ +
Sbjct: 218 DYIKDKSELAEKDISKLADLIGDEDKAKEVVEAAKASMGQDLSEVDLMNVKQFAQRVMNL 277
Query: 704 TDYRTHLTDYLXARM 748
++YR +L +YL +M
Sbjct: 278 SEYRKNLYEYLVTKM 292
>07_03_1578 +
27872636-27872840,27872928-27873175,27873215-27873295,
27873665-27873822,27874391-27874450,27874655-27874873,
27875100-27875201,27875352-27875500,27875582-27875734,
27875839-27876194
Length = 576
Score = 87.0 bits (206), Expect(2) = 2e-21
Identities = 50/128 (39%), Positives = 75/128 (58%), Gaps = 24/128 (18%)
Frame = +2
Query: 329 LGLAHSLSRYKLKFSPDKIDTMIVQAQCLLDDLDKELNNYIMRC---------------- 460
LGL HS SR K+KF+ +++D M++QA LLD LDK++N++ MR
Sbjct: 187 LGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVSLFFPLFYAMINSGGE 246
Query: 461 ----REWYGWHFPELGKIITDNTLFVKVVKLIGTRDYASKTD---LSDIL-PEDLXEKVX 616
REWY WHFPEL KI+ DN ++ K+ K + + ++ D L+DI+ ED +++
Sbjct: 247 SLPPREWYSWHFPELVKIVNDNYVYSKIAKFVVNKSDLAEKDIPALADIIGDEDKAKEIV 306
Query: 617 GAAEISMG 640
AA+ SMG
Sbjct: 307 EAAKASMG 314
Score = 33.1 bits (72), Expect(2) = 2e-21
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +2
Query: 176 VGDSKLGSAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEMTAMALGLAH 343
V + K+GS I E + C N VQELLR +R D + L + T + H
Sbjct: 98 VMEPKVGSHISEATGIPCQCNEFVQELLRGVRLHFDHFIDQLKVVDFTFALVSTGH 153
>04_04_0750 +
27763841-27763972,27764311-27764485,27764908-27764998,
27764999-27765133,27765683-27765742,27765876-27765951,
27766037-27766174,27766509-27767373,27767763-27767865,
27768101-27768176,27768329-27768393,27768463-27768493,
27768618-27768725
Length = 684
Score = 45.2 bits (102), Expect = 6e-05
Identities = 36/177 (20%), Positives = 75/177 (42%)
Frame = +2
Query: 218 DLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLKFSPDKIDTMI 397
D+ + + N +L + Q + +K A+ G S R L+ P+ +I
Sbjct: 240 DMPDLESLNYDDLDSVSKLQKTQRYNDIMQKVENALQKGTDFSNQRSILEEDPEY--QLI 297
Query: 398 VQAQCLLDDLDKELNNYIMRCREWYGWHFPELGKIITDNTLFVKVVKLIGTRDYASKTDL 577
V L D++ E+ R+ Y FPEL ++ + +VV+ IG + DL
Sbjct: 298 VDCNALSVDIENEIIIIHNFIRDKYRLKFPELESLVHHPIDYARVVQKIGNEMDLTLVDL 357
Query: 578 SDILPEDLXEKVXGAAEISMGTEISEDDIMNIQNLXDEIIXITDYRTHLTDYLXARM 748
+LP + + A + G +SE++++ + + + + + +++ +RM
Sbjct: 358 EGLLPSAIIMVISVTASTTSGKPLSEENLVKTIEACERALTLDAAKKKVLEFVESRM 414
>07_01_0304 +
2177044-2177046,2177173-2177235,2177323-2177460,
2177886-2178778,2178935-2179005,2179132-2179234,
2180017-2180092,2180870-2180977
Length = 484
Score = 41.9 bits (94), Expect = 5e-04
Identities = 27/119 (22%), Positives = 53/119 (44%)
Frame = +2
Query: 392 MIVQAQCLLDDLDKELNNYIMRCREWYGWHFPELGKIITDNTLFVKVVKLIGTRDYASKT 571
+IV L D++ E+ R+ Y FPEL ++ + +VV+ IG +
Sbjct: 95 LIVDFNALSVDIENEIIIIHNFIRDKYRLKFPELESLVHHPIDYARVVQKIGNEIDLTLV 154
Query: 572 DLSDILPEDLXEKVXGAAEISMGTEISEDDIMNIQNLXDEIIXITDYRTHLTDYLXARM 748
DL +LP + V A + G +SE+++ + + + + + D++ +RM
Sbjct: 155 DLEGLLPSAIIMVVSVTASTTNGKPLSEENLAKTIEACERALTLDAAKKKVLDFVESRM 213
>12_01_1116 +
11914352-11914415,11915049-11915158,11915254-11915295,
11916263-11916430,11916506-11916682,11916848-11917051,
11917125-11917319
Length = 319
Score = 33.5 bits (73), Expect = 0.18
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Frame = +2
Query: 167 QLLVGDSKLGSAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAG----LPKKEMTAMALG 334
++ VG + I + C+ + V E++ +++ M L+ L K + M+ G
Sbjct: 112 KMAVGKPEYKEIIERSLSVPCMFDEIVMEVMWGLKNLMHVLVPQEKMKLSKDDYLPMSQG 171
Query: 335 LAHSLSRYKLKFSPDKIDTMIVQAQCLLDDLD 430
L L+RY L P+ + I++ C L D +
Sbjct: 172 LYMLLNRYGLDVKPEMVTDSIIKLACFLLDCE 203
>02_02_0157 - 7280335-7280541,7280656-7280762,7280918-7281097,
7281182-7281277,7281378-7281459,7281553-7283037,
7283376-7283450,7283521-7283598,7283708-7283791,
7283885-7283965,7284073-7284291,7284398-7284648,
7284748-7284796
Length = 997
Score = 31.1 bits (67), Expect = 0.98
Identities = 36/188 (19%), Positives = 80/188 (42%), Gaps = 9/188 (4%)
Frame = +2
Query: 155 EVQDQLLVGDSKLGSAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEMTAMALG 334
EV+D+ + D I+EK D+ +E+++ + + D ++ K++M + G
Sbjct: 473 EVEDRKQMTDDIKDKLIKEKDDIVFRLTKEKEEIIKLLEEKEDIIILMKEKEDMVNLGKG 532
Query: 335 LAHSLSRY----KLKFSPDKIDTMIVQAQCLLDDLDKELNNYIMRCREWYGWHFPELGKI 502
+ K + +K D ++V+ +++ KE ++ ++R + E+ K+
Sbjct: 533 EDEDRKQMADDNKDRLIKEK-DDIVVRLTKEKEEIIKEKDDIVVRLTK----EKEEIIKL 587
Query: 503 ITDNTLFVKVVK-----LIGTRDYASKTDLSDILPEDLXEKVXGAAEISMGTEISEDDIM 667
+ + + ++K + ++ +K +L I ED + AEI + ED
Sbjct: 588 LEEKEDIISLMKQKEDMFMSIKEKENKAELKKIADEDAARSIKDKAEIMRLMKEKEDGNN 647
Query: 668 NIQNLXDE 691
I L E
Sbjct: 648 TILKLKKE 655
>11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502
Length = 1385
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +2
Query: 188 KLGSAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLK 367
KLG I +K +L T + +L C+RS +++ K+E T L +SR LK
Sbjct: 935 KLGVVIDDKDNLLKNLLTAISDLCECLRSLSITIVPCSTKREGTPSIGDLPEYISRC-LK 993
Query: 368 FSPDKIDTMIVQ 403
+ P ++++ +Q
Sbjct: 994 YRPKLLESLCLQ 1005
>11_06_0541 + 24771145-24775479
Length = 1444
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +2
Query: 188 KLGSAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLK 367
KLG I +K +L T + +L C+RS +++ K+E T L +SR LK
Sbjct: 993 KLGVVIDDKDNLLKNLLTAISDLCECLRSLSITIVPCSTKREGTPSIGDLPEYISRC-LK 1051
Query: 368 FSPDKIDTMIVQ 403
+ P ++++ +Q
Sbjct: 1052 YRPKLLESLCLQ 1063
>08_02_1154 - 24727668-24728275,24728503-24728844,24730216-24731119
Length = 617
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 416 LDDLDKELNNYIMRCREWYGWHFPELGKIITDNTLFVKVVKLIGTRDYAS 565
L++L K NN+ C+ G H I+ N + +K K+I R+ AS
Sbjct: 368 LEELQKATNNFDRSCQVGDGGHGVVFKGILDLNVVAIKKSKIIVQREIAS 417
>06_03_1186 -
28260487-28262112,28262205-28262345,28262429-28262573,
28262964-28263067,28263324-28263456,28263904-28264013,
28265144-28265167
Length = 760
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +2
Query: 230 VSNTNVQELLRCIRSQMDSL---LAGLPKKEMTAMALGLAHSLSRYKLKFSPDK 382
V N +++ C + M+++ L GLPKKE ++ + A S + L P K
Sbjct: 318 VQKANKKDVRPCEKELMEAVELDLNGLPKKEFGSLKVPEAESKKTFALNVKPKK 371
>03_01_0311 + 2453057-2454610
Length = 517
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +2
Query: 416 LDDLDKELNNYIMR-CREWYGW 478
+ DL N+ I+R CREWY W
Sbjct: 106 IHDLPPRFNDDILRNCREWYQW 127
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,275,110
Number of Sequences: 37544
Number of extensions: 326089
Number of successful extensions: 664
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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