Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2008
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043704-1|AAK21475.1|  487|Caenorhabditis elegans Hypothetical ...   242   2e-64
Z71181-4|CAA94897.1|  486|Caenorhabditis elegans Hypothetical pr...   121   5e-28
AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical...    33   0.29 
U58764-4|AAB00726.2|  216|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AF038615-3|AAB94144.1|  328|Caenorhabditis elegans Hypothetical ...    28   8.1  

>AF043704-1|AAK21475.1|  487|Caenorhabditis elegans Hypothetical
           protein W01B11.3 protein.
          Length = 487

 Score =  242 bits (592), Expect = 2e-64
 Identities = 123/249 (49%), Positives = 165/249 (66%)
 Frame = +2

Query: 2   FNTPEGASTVVKLKNFVKFEDXXXXXXXXXXXIEGXXXXXXXXXXXXXXXXEVQDQLLVG 181
           F+T E A   ++L +F KF+             EG                +  ++L VG
Sbjct: 32  FSTAEKAQENLQLVSFKKFKTTAGAVEATSEITEGKLSKTLKKLLKSSV--DETEKLAVG 89

Query: 182 DSKLGSAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEMTAMALGLAHSLSRYK 361
           D+KLG+ I+EK  L CV ++++ EL+R +R+ ++ LLA   K+EM AM L +AHSL+RYK
Sbjct: 90  DAKLGNLIKEKLSLNCVHDSSINELMRGVRAHIEDLLAE-HKEEMNAMNLAVAHSLARYK 148

Query: 362 LKFSPDKIDTMIVQAQCLLDDLDKELNNYIMRCREWYGWHFPELGKIITDNTLFVKVVKL 541
           +KF+P+KIDTMIVQA  LLDDLDKELNNY+MR REWYGWHFPELGK I D+  + K++K 
Sbjct: 149 VKFNPEKIDTMIVQAVSLLDDLDKELNNYVMRVREWYGWHFPELGKTIQDHQAYAKIIKA 208

Query: 542 IGTRDYASKTDLSDILPEDLXEKVXGAAEISMGTEISEDDIMNIQNLXDEIIXITDYRTH 721
           IG R     TDLS ILPE+L EKV   AEISMGT+IS+ D+++I+ L D++I ++ YR  
Sbjct: 209 IGMRQNCINTDLSSILPEELEEKVKEDAEISMGTDISDIDLIHIKGLCDQVIELSAYRAQ 268

Query: 722 LTDYLXARM 748
           L DYL  RM
Sbjct: 269 LFDYLKNRM 277


>Z71181-4|CAA94897.1|  486|Caenorhabditis elegans Hypothetical
           protein K07C5.4 protein.
          Length = 486

 Score =  121 bits (292), Expect = 5e-28
 Identities = 67/199 (33%), Positives = 110/199 (55%), Gaps = 8/199 (4%)
 Frame = +2

Query: 176 VGDSKLGSAIREKF-DLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEMTAMALGLAHSLS 352
           + DSKL  ++ E F DL+ V    + E+LR  R   + L   LP   ++   L L HS S
Sbjct: 97  INDSKLAGSLTEAFPDLKLVFGGVITEILRGTRVHFERLAKNLPHHSLSKAQLSLGHSYS 156

Query: 353 RYKLKFSPDKIDTMIVQAQCLLDDLDKELNNYIMRCREWYGWHFPELGKIITDNTLFVKV 532
           R K+KF   ++D M++Q+  LLD LDK++N + MR REWY +H+PEL ++  D   + ++
Sbjct: 157 RSKVKFDVHRVDNMVIQSIALLDQLDKDINLFGMRIREWYSYHYPELFRLAPDQYKYSRL 216

Query: 533 VKLIGTRDYAS-----KTDLSDILPEDLXE--KVXGAAEISMGTEISEDDIMNIQNLXDE 691
              I  R+  +     + ++ +IL  D  +  ++  AA  SMG +IS+ D+ NI+     
Sbjct: 217 AVAILDRNKMAENENLENEILEILDNDSEKTAQIIEAARTSMGMDISDLDLENIKRFAAR 276

Query: 692 IIXITDYRTHLTDYLXARM 748
           +  + +YR  L +Y+  RM
Sbjct: 277 VSSLMEYRQQLHEYIKDRM 295


>AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical
           protein Y110A7A.8 protein.
          Length = 504

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
 Frame = +2

Query: 392 MIVQAQCLLDDLDKELNNYIMRCREWYGWHFPELGKIITDNTLFVKVVKLIGT--RDYAS 565
           +IV+   +  D+D E+N      R+ Y   FPEL  ++ +   ++  V+L+G        
Sbjct: 101 LIVKLSHVAADIDNEINVIHKFVRDKYEKRFPELETLVPNALTYLATVQLLGNEINSKVV 160

Query: 566 KTDLSDILPEDLXEKVXGAAEISMGTEISEDDIMNIQN 679
           K  L  IL       V      + G ++  +++  + +
Sbjct: 161 KEQLGGILDASTCMVVSVTVSTTQGVKLEPNELETVMD 198


>U58764-4|AAB00726.2|  216|Caenorhabditis elegans Hypothetical
           protein M03E7.5 protein.
          Length = 216

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/54 (33%), Positives = 31/54 (57%)
 Frame = +2

Query: 359 KLKFSPDKIDTMIVQAQCLLDDLDKELNNYIMRCREWYGWHFPELGKIITDNTL 520
           KLK+S + ID M+ Q   + +DL K+  N ++  R+ + +    LG  I+D T+
Sbjct: 131 KLKYSDNMIDQMLAQGASVFEDLQKQKYN-LLSIRKRFHFLTKSLG--ISDTTI 181


>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical
           protein F59A2.6 protein.
          Length = 1133

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
 Frame = +2

Query: 155 EVQDQLLVGDSKLGSAIREKFD-LQCVSNT---NVQELLRCIRSQMDSLLAGLPKKEMTA 322
           E   + L    K  S +RE+ D LQ V N    ++Q+L +    +M  +      +++  
Sbjct: 299 EAAKKELEASEKEKSELREQMDRLQKVHNAGQEDIQKLQKTWELEMAKIAKSTEDEKLAR 358

Query: 323 MALGLAHSLSRYKLKFSPDKIDTMIVQAQCLLDDLDKEL 439
             L      ++  LK   ++  T I +AQ  LDD +KE+
Sbjct: 359 EQLAGELENAKEDLKVVEEEKHTGIQRAQGALDDAEKEV 397


>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical
           protein F59A2.6 protein.
          Length = 1133

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
 Frame = +2

Query: 155 EVQDQLLVGDSKLGSAIREKFD-LQCVSNT---NVQELLRCIRSQMDSLLAGLPKKEMTA 322
           E   + L    K  S +RE+ D LQ V N    ++Q+L +    +M  +      +++  
Sbjct: 299 EAAKKELEASEKEKSELREQMDRLQKVHNAGQEDIQKLQKTWELEMAKIAKSTEDEKLAR 358

Query: 323 MALGLAHSLSRYKLKFSPDKIDTMIVQAQCLLDDLDKEL 439
             L      ++  LK   ++  T I +AQ  LDD +KE+
Sbjct: 359 EQLAGELENAKEDLKVVEEEKHTGIQRAQGALDDAEKEV 397


>AF038615-3|AAB94144.1|  328|Caenorhabditis elegans Hypothetical
           protein R02D3.5 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +3

Query: 180 VTLSWEVPLEKNLTYNVYQILMSRNCSGVFAHRW 281
           V  +++VPLEK LT+ ++ +L+    +  + +R+
Sbjct: 157 VVRTFKVPLEKELTFALHMLLLDNRNNSAYNYRY 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,185,897
Number of Sequences: 27780
Number of extensions: 301973
Number of successful extensions: 725
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)