Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2008
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.3  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   3.1  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           23   3.1  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   3.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   4.0  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.3  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 242 NVQELLR-CIRSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLKFSP 376
           N  ++LR CI+ ++  L+    K ++    L +  S   YKL++ P
Sbjct: 49  NTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWEP 94


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 242 NVQELLR-CIRSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLKFSP 376
           N  ++LR CI+ ++  L+    K ++    L +  S   YKL++ P
Sbjct: 49  NTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWEP 94


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 381 LSGENFNLYLERE*ARPKAIAVISFLGSPARRL 283
           +SG   N + + E +  KA  V +F+G P R +
Sbjct: 234 ISGTALNCWTQTENSLEKAKQVGAFMGCPTRNV 266


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 381 LSGENFNLYLERE*ARPKAIAVISFLGSPARRL 283
           +SG   N + + E +  KA  V +F+G P R +
Sbjct: 105 ISGTALNCWTQTENSLEKAKQVGAFMGCPTRNV 137


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 381 LSGENFNLYLERE*ARPKAIAVISFLGSPARRL 283
           +SG   N + + E +  KA  V +F+G P R +
Sbjct: 234 ISGTALNCWTQTENSLEKAKQVGAFMGCPTRNV 266


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 650 SEDDIMNIQNLXDEIIXITDYR-THLTD 730
           SE+D+  I N   E   I+DY+  H+T+
Sbjct: 353 SEEDLKRITNQPSEGEDISDYKFRHITE 380


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 718 SPVVCDXNNLIXQILYVHNVVFRYFS 641
           +PV+ D N LI   LY++++    FS
Sbjct: 324 TPVMPDLNALIATGLYINDLSMHDFS 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,117
Number of Sequences: 438
Number of extensions: 3331
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)