Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2005
(719 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 300 8e-82
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 297 6e-81
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 288 3e-78
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 31 0.92
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 1.2
07_03_1509 - 27246721-27247350 29 2.8
10_08_0806 + 20709599-20710597 29 4.9
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464... 28 8.6
01_06_0212 + 27575406-27575604,27575723-27576241,27576371-27576387 28 8.6
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 300 bits (736), Expect = 8e-82
Identities = 136/201 (67%), Positives = 158/201 (78%)
Frame = +2
Query: 26 GQRXCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSE 205
G CYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSE
Sbjct: 311 GPVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSE 370
Query: 206 ALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPX 385
ALEA RI CNKY+ K+ GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP
Sbjct: 371 ALEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPT 430
Query: 386 GTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFXK 565
GT ARVRIGQ ++SVR D A EALRRAKFKFPGRQ++ S KWGFT+++RDE+ K
Sbjct: 431 GTCARVRIGQVLLSVRCRDANAAHAQEALRRAKFKFPGRQRVIFSAKWGFTRFKRDEYLK 490
Query: 566 LREEGRLANDGCIVXYRPEHG 628
L+ EGR+ DG HG
Sbjct: 491 LKSEGRIVPDGVNAKLLTRHG 511
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 297 bits (729), Expect = 6e-81
Identities = 136/199 (68%), Positives = 157/199 (78%)
Frame = +2
Query: 38 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 217
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +SSEALEA
Sbjct: 8 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEA 67
Query: 218 GRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPXGTVA 397
RI CNKY+ KN GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKP GT A
Sbjct: 68 ARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 127
Query: 398 RVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFXKLREE 577
RV IGQ ++SVR + EALRRAKFKFPGRQKI S+KWGFTK+ R+E+ KL+ E
Sbjct: 128 RVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAE 187
Query: 578 GRLANDGCIVXYRPEHGPL 634
GR+ +DG HG L
Sbjct: 188 GRIMSDGVNAQLLGSHGRL 206
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 288 bits (706), Expect = 3e-78
Identities = 130/187 (69%), Positives = 151/187 (80%)
Frame = +2
Query: 38 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 217
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 218 GRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPXGTVA 397
RI CNKY+ K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKP GT A
Sbjct: 64 ARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 123
Query: 398 RVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFXKLREE 577
RV IGQ ++SVR EALRRAKFKFPGRQKI S+KWGFTK+ RDE+ +L+ E
Sbjct: 124 RVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSE 183
Query: 578 GRLANDG 598
GR+ DG
Sbjct: 184 GRIMPDG 190
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 31.1 bits (67), Expect = 0.92
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 140 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 259
T D P C +HL SD Y S E ++AG+ C L K G
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -3
Query: 420 MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 328
+ CP+ + + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>07_03_1509 - 27246721-27247350
Length = 209
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = +3
Query: 408 LDSPSCPCALVTGGRHRSSRL---CAVP--SSSSPDVKRSTYQRSGVS 536
L P PC RH RL +P +SSSP+++R+T R+G S
Sbjct: 132 LQPPLSPCLSAGRRRHHLPRLHDAALIPGITSSSPELRRNTVARAGFS 179
>10_08_0806 + 20709599-20710597
Length = 332
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = -1
Query: 215 PPKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQVHPDRTSISDTVYFCSTGSX 36
PP PL+ V + S+ R+R +S ++ WD V I D Y + G
Sbjct: 66 PPPPLAPLVMSSSSSSSSQGGGRRRPMSRALIEQHRPWDVVDNMALIIIDQTYAAALG-- 123
Query: 35 LAGRRPM 15
+ GRR M
Sbjct: 124 IPGRREM 130
>02_05_0844 -
32144417-32144764,32145588-32145686,32146218-32146410,
32147049-32147107,32147189-32147263,32147557-32147670,
32147776-32147895,32148204-32148216,32148421-32148512,
32149078-32149164,32149254-32149328,32149630-32149680,
32149852-32149947,32150135-32150221,32150312-32150368,
32150475-32150600,32150709-32150949,32151028-32151114,
32151260-32151637,32152847-32153187
Length = 912
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -1
Query: 158 VESRQRSLSSYPNRRYGSWDQVHPDRTSISDTVYFCSTGSXLA 30
+ S + + S GSW H D +++ DT+ CS+G ++
Sbjct: 758 MNSSNQQIGSPSEEDLGSWGH-HSDPSTVPDTILQCSSGDEVS 799
>01_06_0212 + 27575406-27575604,27575723-27576241,27576371-27576387
Length = 244
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -2
Query: 505 LTSGELELGTAQSLDDLCLPPVTRAHGHDGLSNANTCYSTXRLAKRTTHP 356
L+SGEL +G + D+ LPPV G G S+A S + +R P
Sbjct: 134 LSSGELLIGASSPYDEPPLPPVHSRRG-AGRSSAVPRLSAPDIGRRYYEP 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,199,759
Number of Sequences: 37544
Number of extensions: 457092
Number of successful extensions: 1247
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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