Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2005
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   310   7e-85
Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like pro...    28   5.8  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  310 bits (761), Expect = 7e-85
 Identities = 141/202 (69%), Positives = 161/202 (79%)
 Frame = +2

Query: 38  CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 217
           CYRY KNKPYPKSRFCRGVPD KIRIFDLG KRA VD FP CVH++S+E E LSSEALEA
Sbjct: 8   CYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHLSSEALEA 67

Query: 218 GRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPXGTVA 397
            RIC NKY+VKNCGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+GKP G VA
Sbjct: 68  ARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVA 127

Query: 398 RVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFXKLREE 577
           RV IG  + S+R  +      IEA RRAKFKFPGRQ I  S+KWGFTK++R+++ ++R E
Sbjct: 128 RVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTKWDREDYERMRAE 187

Query: 578 GRLANDGCIVXYRPEHGPLDAW 643
           GRL +DG  V  + EHGPL  W
Sbjct: 188 GRLRSDGVGVQLQREHGPLTKW 209


>Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical
           protein F07A11.6d protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -2

Query: 451 LPPVTRAHGHDGLSNANTCYSTXRLAKRTTHPSLEPISSSA 329
           +P VT A   + LSN  T  ST  LA   T  +L P+S  A
Sbjct: 46  VPVVTTASTPNPLSNLETLLSTASLANLATGGALNPLSMLA 86


>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
           protein F53H1.4a protein.
          Length = 1370

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +3

Query: 3   VKXHHGAPASEXATGTAKINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTFHCACTWCPT 182
           +K   G+P+S+ A   +       R +VGV    + +   W RR+  L  ++ AC+WC  
Sbjct: 305 LKKDTGSPSSKNAPLFSPSKWGEKRIAVGV----KKMEDAWKRRD--LELYNEACSWCEK 358

Query: 183 NMN 191
           N++
Sbjct: 359 NLS 361


>Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical
           protein F01G10.1 protein.
          Length = 618

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +2

Query: 362 RGAFGKPXGTVARVRIGQPIMSVRSSDRWKAQVIE--ALRRAKFKFPGRQK 508
           R   GKP   +A+   G+ I  + + D W  + +    +   K +F G QK
Sbjct: 228 RSTKGKPTAIIAKTLKGKGIEGIENEDNWHGKPVPEGTVNAIKARFHGSQK 278


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 381 GLPNAPRIPVWSLSAPA 331
           G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like
           protein 2 protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +2

Query: 77  RFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 223
           R C  +   K  I D  K+ A ++     + +++ EYEQ++S   +AG+
Sbjct: 93  RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,283,480
Number of Sequences: 27780
Number of extensions: 360016
Number of successful extensions: 967
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)