Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2004
(686 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58746-2|AAB00622.2| 283|Caenorhabditis elegans Hypothetical pr... 117 7e-27
AF099000-2|AAK71875.1| 337|Caenorhabditis elegans Serpentine re... 30 1.3
U61949-2|AAB03152.1| 884|Caenorhabditis elegans Puromycin-sensi... 29 2.4
U61949-1|AAY44009.1| 948|Caenorhabditis elegans Puromycin-sensi... 29 2.4
AL022270-2|CAB63433.2| 952|Caenorhabditis elegans Hypothetical ... 29 3.1
Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr... 29 4.1
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ... 29 4.1
Z81554-1|CAB04506.1| 838|Caenorhabditis elegans Hypothetical pr... 28 5.4
U88315-2|AAB42370.2| 434|Caenorhabditis elegans Hypothetical pr... 28 5.4
U88315-1|AAM29668.1| 457|Caenorhabditis elegans Hypothetical pr... 28 5.4
U00048-7|AAB53831.2| 752|Caenorhabditis elegans Hypothetical pr... 27 9.5
>U58746-2|AAB00622.2| 283|Caenorhabditis elegans Hypothetical
protein R05G6.7 protein.
Length = 283
Score = 117 bits (282), Expect = 7e-27
Identities = 59/140 (42%), Positives = 84/140 (60%), Gaps = 2/140 (1%)
Frame = +1
Query: 61 MAPPYYADLGKKANDVFIXGYHFGXFKLDLKTKSESG--VEFTSGITSNQESGKVFGSLS 234
MAPP +ADLGK A D+F GY+FG K+D T++ VEF S + N SGK+ G+L
Sbjct: 1 MAPPTFADLGKSAKDLFNKGYNFGFLKIDSTTRAGDNKEVEFKSAASHNIGSGKLGGNLD 60
Query: 235 SKXAXKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFT 414
K YG+T TEKWNT+N L T I + ++ GLKVTL+ +AP G ++GK+K +
Sbjct: 61 VKYKIPQYGITLTEKWNTENQLGTVIEVNEQFGRGLKVTLDSLYAPHAGKRSGKVKLDWA 120
Query: 415 NDTVAENTNLDLDLAGPVVD 474
T ++ + A PV++
Sbjct: 121 LPTARVTADVGVTSA-PVIN 139
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 479 AAVLNYQGWLAGVHTQFDTQKAKFSKNNFALRYQSGDFALHTXVXNGKDF 628
A V + GWL G FD+ K + + A + + + LH+ V N DF
Sbjct: 141 AGVFSRDGWLIGAAATFDSSSNKLAATSLAFGHSTPQYTLHSFVINSTDF 190
>AF099000-2|AAK71875.1| 337|Caenorhabditis elegans Serpentine
receptor, class h protein128 protein.
Length = 337
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -1
Query: 563 SCSWRTLLFVYQTGCVHQPANPGSLVLLPTSTTGPAKSRSKLVFSATVSLV 411
S ++ LL + T VH+P V LPT T AKSR V +S +
Sbjct: 283 SLAFHGLLSTFTTLAVHKPYRESLKVFLPTCMTWRAKSRVSSVREVQLSAI 333
>U61949-2|AAB03152.1| 884|Caenorhabditis elegans
Puromycin-sensitive aminopeptidaseprotein 1, isoform a
protein.
Length = 884
Score = 29.5 bits (63), Expect = 2.4
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 2/142 (1%)
Frame = +1
Query: 148 LKTKSESGVEFTSGITSNQESGKVFGSLSSKXAXKDYGLTFTEKWNTDNTLATDITIQDK 327
L T E + G+TS ++ +V ++ + A +G T KW TD+ +++
Sbjct: 284 LVTYREIALLVDPGVTSTRQKSRVALVVAHELAHLWFGNLVTMKW------WTDLWLKEG 337
Query: 328 IAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAENTNLD-LDLAGPV-VDVGSSTKLPG 501
A+ ++ G P+ K+ F ND +A LD L + P+ V++ + +L
Sbjct: 338 FASFMEYMFVGANCPEF-----KIWLHFLNDELASGMGLDALRNSHPIEVEIDNPNELDE 392
Query: 502 LAGWCTHPV*YTKSKVLQEQLC 567
+ T Y KS + LC
Sbjct: 393 IYDSIT----YAKSNSVNRMLC 410
>U61949-1|AAY44009.1| 948|Caenorhabditis elegans
Puromycin-sensitive aminopeptidaseprotein 1, isoform b
protein.
Length = 948
Score = 29.5 bits (63), Expect = 2.4
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 2/142 (1%)
Frame = +1
Query: 148 LKTKSESGVEFTSGITSNQESGKVFGSLSSKXAXKDYGLTFTEKWNTDNTLATDITIQDK 327
L T E + G+TS ++ +V ++ + A +G T KW TD+ +++
Sbjct: 348 LVTYREIALLVDPGVTSTRQKSRVALVVAHELAHLWFGNLVTMKW------WTDLWLKEG 401
Query: 328 IAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAENTNLD-LDLAGPV-VDVGSSTKLPG 501
A+ ++ G P+ K+ F ND +A LD L + P+ V++ + +L
Sbjct: 402 FASFMEYMFVGANCPEF-----KIWLHFLNDELASGMGLDALRNSHPIEVEIDNPNELDE 456
Query: 502 LAGWCTHPV*YTKSKVLQEQLC 567
+ T Y KS + LC
Sbjct: 457 IYDSIT----YAKSNSVNRMLC 474
>AL022270-2|CAB63433.2| 952|Caenorhabditis elegans Hypothetical
protein C26G2.2 protein.
Length = 952
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +1
Query: 256 YGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTND 420
Y TFT W+T++T+ T QD + + T E T A + + T T +
Sbjct: 460 YPSTFTSSWSTESTVLT-TQQQDTTTSVILETTEATDAASSSLSPDDVSTQLTTE 513
>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical protein
T08A11.1 protein.
Length = 1872
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 154 TKSESGVEFTSGITSNQESGKVFGSLSSKXAXKDYGLTFTEKWNTDNTLATD 309
T+S G + +S G+ S K +G T EKWN D + TD
Sbjct: 1044 TRSRRGANMEDDRKHSSKSNSA-GNASKKYKVWAWGSTGEEKWNVDMEIGTD 1094
>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
protein T08A11.1 protein.
Length = 1872
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 154 TKSESGVEFTSGITSNQESGKVFGSLSSKXAXKDYGLTFTEKWNTDNTLATD 309
T+S G + +S G+ S K +G T EKWN D + TD
Sbjct: 1044 TRSRRGANMEDDRKHSSKSNSA-GNASKKYKVWAWGSTGEEKWNVDMEIGTD 1094
>Z81554-1|CAB04506.1| 838|Caenorhabditis elegans Hypothetical
protein F57G4.1 protein.
Length = 838
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 217 VFGSLSSKXAXKDYGLTFTEKWNTDNTLATDI 312
VFG LSS DYG+T K+ TD I
Sbjct: 252 VFGELSSSKKTIDYGITKQWKYRTDGRFELSI 283
>U88315-2|AAB42370.2| 434|Caenorhabditis elegans Hypothetical
protein C37H5.6b protein.
Length = 434
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +2
Query: 554 KNNFALRYQSGDFALHTXVXNGKDFXRVNLPKGI 655
K N R Q G+ A HT V NG+ + LP GI
Sbjct: 33 KINVTARCQGGNNAGHTVVANGRKYDFHILPSGI 66
>U88315-1|AAM29668.1| 457|Caenorhabditis elegans Hypothetical
protein C37H5.6a protein.
Length = 457
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +2
Query: 554 KNNFALRYQSGDFALHTXVXNGKDFXRVNLPKGI 655
K N R Q G+ A HT V NG+ + LP GI
Sbjct: 56 KINVTARCQGGNNAGHTVVANGRKYDFHILPSGI 89
>U00048-7|AAB53831.2| 752|Caenorhabditis elegans Hypothetical
protein C05D11.9 protein.
Length = 752
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 675 RRSPACQIPFGRLTRXKSLPLXTXVWRAK 589
R+S + FGR T K + L T VW AK
Sbjct: 87 RKSANSRTKFGRSTSTKGIWLSTHVWHAK 115
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,205,456
Number of Sequences: 27780
Number of extensions: 300947
Number of successful extensions: 723
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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