Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2003
         (580 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6NP70 Cluster: RE05438p; n=1; Drosophila melanogaster|...    70   5e-11
UniRef50_Q16VL1 Cluster: Putative uncharacterized protein; n=1; ...    67   2e-10
UniRef50_Q6CHG3 Cluster: Ylt1 protein; n=6; Yarrowia lipolytica|...    35   1.2  
UniRef50_A0X176 Cluster: Putative uncharacterized protein precur...    34   2.1  
UniRef50_A5AG64 Cluster: Putative uncharacterized protein; n=1; ...    33   4.9  
UniRef50_Q5NRE7 Cluster: Chemotaxis protein; n=1; Zymomonas mobi...    32   8.5  

>UniRef50_Q6NP70 Cluster: RE05438p; n=1; Drosophila
           melanogaster|Rep: RE05438p - Drosophila melanogaster
           (Fruit fly)
          Length = 665

 Score = 69.7 bits (163), Expect = 5e-11
 Identities = 43/95 (45%), Positives = 52/95 (54%)
 Frame = +3

Query: 273 AEAPRELPNELSAPYEVPQFPIEQIEKKLLIQRQLNVKAAECAQSVRXXXXXXXXXXXXX 452
           AEA  E+ NE+SAPYEVPQFPIEQIEKKL IQR LN K A   + V              
Sbjct: 53  AEADVEVTNEISAPYEVPQFPIEQIEKKLQIQRHLNEKQATGPRPVATAAVLATNRESSS 112

Query: 453 XXXXRLKVPDDDDDEIILPHFQRVAXSGXDTFRVP 557
               R      + ++  + +FQRV+ SG DT  VP
Sbjct: 113 STEGRESAVTMERNDADI-NFQRVSISGEDTSGVP 146


>UniRef50_Q16VL1 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 225

 Score = 67.3 bits (157), Expect = 2e-10
 Identities = 42/89 (47%), Positives = 48/89 (53%)
 Frame = +3

Query: 291 LPNELSAPYEVPQFPIEQIEKKLLIQRQLNVKAAECAQSVRXXXXXXXXXXXXXXXXXRL 470
           LPNE+SAPYEVPQFPIEQIE KL +QRQLN K  E                         
Sbjct: 85  LPNEISAPYEVPQFPIEQIENKLQLQRQLNAKVME-----------QDRHSVAAEIHPDE 133

Query: 471 KVPDDDDDEIILPHFQRVAXSGXDTFRVP 557
            +P D+ D   + HFQRV+ SG DT  VP
Sbjct: 134 HLPFDEHD--FVAHFQRVSISGEDTSGVP 160


>UniRef50_Q6CHG3 Cluster: Ylt1 protein; n=6; Yarrowia lipolytica|Rep:
            Ylt1 protein - Yarrowia lipolytica (Candida lipolytica)
          Length = 2621

 Score = 35.1 bits (77), Expect = 1.2
 Identities = 17/40 (42%), Positives = 26/40 (65%)
 Frame = +3

Query: 192  DGSRSPLIITDSFFDDGGSESPTSAVGAEAPRELPNELSA 311
            DG+  PL+ TD+   D  +E  +S+ G+EAP E P+ +SA
Sbjct: 1320 DGTLGPLLPTDASSVDDSNELCSSSSGSEAPSEAPSGVSA 1359


>UniRef50_A0X176 Cluster: Putative uncharacterized protein
           precursor; n=1; Shewanella pealeana ATCC 700345|Rep:
           Putative uncharacterized protein precursor - Shewanella
           pealeana ATCC 700345
          Length = 1043

 Score = 34.3 bits (75), Expect = 2.1
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -1

Query: 313 GAESSLGSSRGASAPTALVGLSLPPSSKNESVMISGDLEPSW 188
           G + +LG SRG S      G+S    + N ++ +SGD++P W
Sbjct: 351 GVDGTLGQSRGVSITNDKTGVS----ANNRTINLSGDIQPGW 388


>UniRef50_A5AG64 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 318

 Score = 33.1 bits (72), Expect = 4.9
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +3

Query: 189 QDGSRSPLIITDSFFDDGGSESPTSAVGAEAPRELPNELSAPYEVPQFPIEQIEKKLLIQ 368
           +DG ++ LII D+   DG  + PT++      + L   + A Y +P  PI     + L +
Sbjct: 122 EDGEKTVLIIPDTPSSDGPLDKPTTSRSFSLNKVLFPSVKATYSLPATPIASSGSESLQE 181

Query: 369 RQLN 380
           + L+
Sbjct: 182 KNLD 185


>UniRef50_Q5NRE7 Cluster: Chemotaxis protein; n=1; Zymomonas
           mobilis|Rep: Chemotaxis protein - Zymomonas mobilis
          Length = 776

 Score = 32.3 bits (70), Expect = 8.5
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = +3

Query: 234 DDGGSESPTSAVGAEAPRELPNELSAPYEVPQFP 335
           ++GG E P+SA  AEAP E P E  AP E    P
Sbjct: 124 EEGGGEPPSSA--AEAPAETPPEPEAPAEEDSVP 155


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 474,218,650
Number of Sequences: 1657284
Number of extensions: 8086063
Number of successful extensions: 22614
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22596
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39987623712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)