Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2000
(621 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 111 3e-25
SB_19076| Best HMM Match : HECT (HMM E-Value=0) 61 8e-10
SB_6163| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_11112| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.046
SB_11512| Best HMM Match : E-MAP-115 (HMM E-Value=1.4) 33 0.14
SB_29635| Best HMM Match : E-MAP-115 (HMM E-Value=1.2) 33 0.14
SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069) 31 0.57
SB_22045| Best HMM Match : Amelogenin (HMM E-Value=0.23) 31 0.57
SB_32286| Best HMM Match : Extensin_2 (HMM E-Value=5.9) 31 0.75
SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86) 31 1.00
SB_19890| Best HMM Match : Drf_FH1 (HMM E-Value=2.4) 31 1.00
SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6) 30 1.3
SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19) 30 1.3
SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88) 30 1.7
SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_29958| Best HMM Match : Pkinase (HMM E-Value=2.6e-08) 29 2.3
SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0) 29 3.0
SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53) 29 3.0
SB_30182| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29) 29 3.0
SB_22648| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012) 29 4.0
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_22143| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_17145| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_11259| Best HMM Match : Peptidase_S8 (HMM E-Value=0) 28 5.3
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_40330| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_29302| Best HMM Match : LRR_1 (HMM E-Value=1.1e-11) 28 7.0
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_51034| Best HMM Match : Extensin_2 (HMM E-Value=0.038) 27 9.3
SB_41862| Best HMM Match : POR_N (HMM E-Value=3.5) 27 9.3
SB_59684| Best HMM Match : C1_3 (HMM E-Value=8.3) 27 9.3
SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59) 27 9.3
SB_26832| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 111 bits (268), Expect = 3e-25
Identities = 58/91 (63%), Positives = 69/91 (75%), Gaps = 5/91 (5%)
Frame = +3
Query: 183 YKYTPNMRNPPA----PQPAVHIQG-QEPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHP 347
YK++ +RNPP P+ I G QEPL ++LAAA QEQKQMLGERLFPLIQ HP
Sbjct: 400 YKFSQTVRNPPPAGQMPEGGQGIPGGQEPLNPSVLAAATPQEQKQMLGERLFPLIQTNHP 459
Query: 348 DLAGKITGMLLEIDNSELLHMLEHAESLKAK 440
D+AGKITGMLLEIDN+ELLHMLE ++L+ K
Sbjct: 460 DMAGKITGMLLEIDNAELLHMLESRDALQMK 490
>SB_19076| Best HMM Match : HECT (HMM E-Value=0)
Length = 2018
Score = 60.9 bits (141), Expect = 8e-10
Identities = 29/61 (47%), Positives = 42/61 (68%)
Frame = +3
Query: 282 PLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAV 461
PL +Q LGERL+P + + P LA +ITGMLLE+ ++LL +L ++L +VDEAV V
Sbjct: 1644 PLPYHRQSLGERLYPRVHALKPALASRITGMLLELSPAQLLLLLASEDTLVQRVDEAVDV 1703
Query: 462 L 464
+
Sbjct: 1704 I 1704
>SB_6163| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/55 (40%), Positives = 36/55 (65%)
Frame = +3
Query: 300 QMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 464
Q LG+R++ +Q+++P LA ++TGMLLE+ +L H+L+ E L + A VL
Sbjct: 79 QSLGDRVYGTVQQLYPTLAERVTGMLLEMPADQLNHLLDSREGLLEHIHTAAHVL 133
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/41 (43%), Positives = 29/41 (70%)
Frame = +3
Query: 291 EQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHML 413
EQK+ +GE++ I+++HP A ITGMLLE+ +LL+ +
Sbjct: 288 EQKEFIGEKIHDEIRKLHPGHADVITGMLLEMGVDQLLNTI 328
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/59 (32%), Positives = 33/59 (55%)
Frame = +3
Query: 288 QEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 464
++ K ++GE ++ + +P A KITGMLLE++ L + + + L + EAV L
Sbjct: 174 EDLKSIIGENIYSQLVEKYPKDADKITGMLLEMELDLLQKVSQDPDLLGQRATEAVETL 232
Score = 35.9 bits (79), Expect = 0.027
Identities = 16/53 (30%), Positives = 32/53 (60%)
Frame = +3
Query: 306 LGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 464
LG +++ ++ ++P+ A KITGMLL+ E+ +L + L ++ A ++L
Sbjct: 15 LGAKIYDVVFEIYPNEADKITGMLLDGGEEEVASLLSDEKRLNERIIAAASLL 67
>SB_11112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 464
Score = 35.1 bits (77), Expect = 0.046
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +3
Query: 45 PAPRAPAQSTIRTSLGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPPAPQ 224
P+ +AP QST + Q+ + S R P S S+ A+Y+ TP+ R P
Sbjct: 290 PSQQAPYQSTPSQQAPYQSTPSQRAPYQSTPSQRAPYQSTPSQQASYQSTPSQRAPYQST 349
Query: 225 PAVHIQGQEP 254
P+ Q+P
Sbjct: 350 PSQQAPYQKP 359
Score = 33.5 bits (73), Expect = 0.14
Identities = 27/93 (29%), Positives = 39/93 (41%)
Frame = +3
Query: 45 PAPRAPAQSTIRTSLGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPPAPQ 224
P+ +AP QST + QQ + S R P S S+ A Y+ TP+ +
Sbjct: 280 PSQQAPYQSTPSQQAPYQSTPSQQAPYQSTPSQRAPYQSTPSQRAPYQSTPSQQASYQST 339
Query: 225 PAVHIQGQEPLTSTMLAAAPLQEQKQMLGERLF 323
P+ + P ST AP Q+ + G LF
Sbjct: 340 PS----QRAPYQSTPSQQAPYQKPFILFGTSLF 368
Score = 31.9 bits (69), Expect = 0.43
Identities = 25/82 (30%), Positives = 34/82 (41%)
Frame = +3
Query: 45 PAPRAPAQSTIRTSLGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPPAPQ 224
P+ RAP QST + QQ + S + P S ++ A Y+ TP+ P
Sbjct: 220 PSQRAPYQSTPSQQAPYQSTPSQQAPYQSTPSQQAPYQSTPAQQAPYQSTPSQIAPYQST 279
Query: 225 PAVHIQGQEPLTSTMLAAAPLQ 290
P+ Q P ST AP Q
Sbjct: 280 PS----QQAPYQSTPSQQAPYQ 297
Score = 31.9 bits (69), Expect = 0.43
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +3
Query: 45 PAPRAPAQSTIRTSLGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPPAPQ 224
PA +AP QST + QQ + S + P S S+ A Y+ TP+ R P
Sbjct: 260 PAQQAPYQSTPSQIAPYQSTPSQQAPYQSTPSQQAPYQSTPSQQAPYQSTPSQRAPYQST 319
Query: 225 PA 230
P+
Sbjct: 320 PS 321
Score = 31.5 bits (68), Expect = 0.57
Identities = 25/82 (30%), Positives = 34/82 (41%)
Frame = +3
Query: 45 PAPRAPAQSTIRTSLGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPPAPQ 224
P+ +AP QST + QQ + S P S S+ A Y+ TP+ + P
Sbjct: 240 PSQQAPYQSTPSQQAPYQSTPAQQAPYQSTPSQIAPYQSTPSQQAPYQSTPSQQAPYQST 299
Query: 225 PAVHIQGQEPLTSTMLAAAPLQ 290
P+ Q P ST AP Q
Sbjct: 300 PS----QQAPYQSTPSQRAPYQ 317
>SB_11512| Best HMM Match : E-MAP-115 (HMM E-Value=1.4)
Length = 639
Score = 33.5 bits (73), Expect = 0.14
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 72 TIRTSLGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTP-NMRNPPAPQPAVHIQGQ 248
TI+ S + Q A S RPP S S RPA + P ++R+PP P+P
Sbjct: 551 TIKGSDAETAVDTLQTPIATPRSARPP--SDSPRPARPQPEPRHLRSPPEPKPRHRDSSH 608
Query: 249 EPLT 260
+P+T
Sbjct: 609 DPVT 612
>SB_29635| Best HMM Match : E-MAP-115 (HMM E-Value=1.2)
Length = 2658
Score = 33.5 bits (73), Expect = 0.14
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 72 TIRTSLGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTP-NMRNPPAPQPAVHIQGQ 248
TI+ S + Q A S RPP S S RPA + P ++R+PP P+P
Sbjct: 2570 TIKGSDAETAVDTLQTPIATPRSARPP--SDSPRPARPQPEPRHLRSPPEPKPRHRDSSH 2627
Query: 249 EPLT 260
+P+T
Sbjct: 2628 DPVT 2631
>SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)
Length = 135
Score = 31.5 bits (68), Expect = 0.57
Identities = 23/82 (28%), Positives = 28/82 (34%)
Frame = +3
Query: 9 ASAYANMQPTYRPAPRAPAQSTIRTSLGARPITGQQGVAAAAASIRPPLVSQSSRPANYK 188
A Y QP Y P P I +G P +GQ G PP P
Sbjct: 55 AGGYPPPQPGYAGGPPPPG---IAPGIGGPPPSGQYGA--------PPTSQPYGAPPTSG 103
Query: 189 YTPNMRNPPAPQPAVHIQGQEP 254
Y ++PP PQP+ P
Sbjct: 104 YPGYQQHPPPPQPSAQSYNAPP 125
>SB_22045| Best HMM Match : Amelogenin (HMM E-Value=0.23)
Length = 149
Score = 31.5 bits (68), Expect = 0.57
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 159 SQSSRPANYKYTPNMRNPPAPQPAVHIQGQEPLTSTMLAAAPLQEQ 296
+QS P N++YTP P +P P H P+TST + P Q
Sbjct: 53 AQSPAPPNHQYTPITSAPQSPVPPNH--QCRPITSTPQSPVPPNHQ 96
Score = 28.3 bits (60), Expect = 5.3
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Frame = +3
Query: 39 YRPAPRAPAQSTIRTSLGARPITGQQGVAAAAASIRPPLVS--QSSRPANYKYTPNMRNP 212
Y P AP QS + + RPIT P+ S QS P N++Y P P
Sbjct: 63 YTPITSAP-QSPVPPNHQCRPITSTPQSPVPPNHQHRPITSAAQSPVPPNHQYRPITSTP 121
Query: 213 PAP 221
+P
Sbjct: 122 QSP 124
>SB_32286| Best HMM Match : Extensin_2 (HMM E-Value=5.9)
Length = 535
Score = 31.1 bits (67), Expect = 0.75
Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Frame = +3
Query: 87 LGARPITGQQGVAAAAASIRPPLVSQSS----RPANYKYTPNMRNPPAPQPAVHIQGQEP 254
LG P G G+ A PP +++ RP R P APQP P
Sbjct: 62 LGNTPSMGSYGLVQAQQVRTPPKLTEGETEPGRPPESAERKKRRGPTAPQPGARTHRVSP 121
Query: 255 LTSTMLAAAPLQEQKQMLGERL 320
T + P ++ ++ G+ L
Sbjct: 122 ETRQYRSRPPKGQKDRIPGQAL 143
>SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86)
Length = 809
Score = 30.7 bits (66), Expect = 1.00
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +3
Query: 147 PPLVSQSSRPAN-YKY---TPNMRNPPAPQPAVHIQGQEPLTSTMLAAAPLQEQKQ 302
P ++ PA Y Y TPNM P + Q +H+QGQ+ + +TM A +Q Q+Q
Sbjct: 641 PSMIEGQGGPAQGYAYNSRTPNMTAPQSNQ-ILHLQGQQRVNATM-ATPGVQIQQQ 694
>SB_19890| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)
Length = 169
Score = 30.7 bits (66), Expect = 1.00
Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Frame = +3
Query: 33 PTYRPAPRAPAQ-------STIRTSLGARPITGQQGVAAAAASIRPPLVSQSSRPANYKY 191
PT RP PR PA+ STI T +P + V A P + R
Sbjct: 21 PTPRPKPRPPAKPLILPKSSTISTKPPIKPKPAVRRVPPPAPKKAPEDATSPKRNEAAPP 80
Query: 192 TPNMRNPPAPQPAVHIQGQEPLTSTM 269
N PP P H+Q +E L+S +
Sbjct: 81 PVNEVPPPRPVKPRHLQQEEVLSSNV 106
>SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)
Length = 237
Score = 30.3 bits (65), Expect = 1.3
Identities = 31/87 (35%), Positives = 35/87 (40%), Gaps = 13/87 (14%)
Frame = +3
Query: 45 PAPRAPAQSTIRTSLGARPITGQQGVAAAAASIRPPLVSQSSRPANY--KYTPNM----- 203
P P AP + T A P QQ AAS P S +PA+Y YTP
Sbjct: 46 PTPVAPPSTVPYT---ATPAPAQQAPHTTAASQPAPYTPASGQPASYTPAYTPYTPASTV 102
Query: 204 -RNPP-----APQPAVHIQGQEPLTST 266
R PP P PA Q Q+PL T
Sbjct: 103 GRMPPTTSQSTPSPAPFFQ-QQPLVPT 128
>SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)
Length = 851
Score = 30.3 bits (65), Expect = 1.3
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Frame = +3
Query: 45 PAPRAPAQSTIRT-SLGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPPAP 221
P P +PA + + P T + +A+ I PPL++ S TP + PPAP
Sbjct: 216 PGPSSPASDSDNSPGTPPTPPTVRLRKKESASRIPPPLLTTMSLD-----TP-LAEPPAP 269
Query: 222 QPAVHIQGQEPLTSTMLAAA---PLQEQKQM 305
P PL+S AAA L E K M
Sbjct: 270 PPTTPTSAGAPLSSPPSAAAVAKKLPEHKPM 300
>SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
Length = 379
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/62 (35%), Positives = 30/62 (48%)
Frame = +3
Query: 39 YRPAPRAPAQSTIRTSLGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPPA 218
Y+P PR ++ SL ARP + + S P LVS + PA+Y Y P R P
Sbjct: 95 YKPLPRIHTSPSL-VSLQARPSYPYKPLPRIPTS--PSLVSLQA-PASYLYKPLPRYKPL 150
Query: 219 PQ 224
P+
Sbjct: 151 PR 152
>SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 29.5 bits (63), Expect = 2.3
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 99 PITGQQGVAAAAASIRPPLVSQSSRPA-NYKYTPNMRNPPAPQPAVHIQGQEPLTSTMLA 275
P G QG AAAA + PP S R A T + + P + P+VH Q T++ A
Sbjct: 165 PGFGVQGAAAAALAGAPPRSLSSIRSAIKPGVTTHHQGPISTTPSVHPQAS--ATTSAPA 222
Query: 276 AAPL 287
AP+
Sbjct: 223 VAPI 226
>SB_29958| Best HMM Match : Pkinase (HMM E-Value=2.6e-08)
Length = 857
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -1
Query: 228 LVVELVGCACLVYIYNWLGDCFE 160
L+ +L GC ++ +YNWL +C+E
Sbjct: 561 LLNQLQGCDHIIKLYNWLRNCWE 583
>SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1321
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 141 IRPPLVSQSSRPANYKYTPNMRNPPAPQPAVHIQGQE 251
+ PP+ SQ P + P M + P P P +Q +E
Sbjct: 968 VNPPMSSQPQPPPGNQVNPPMSSQPQPPPGNQVQLKE 1004
>SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)
Length = 287
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Frame = +3
Query: 45 PAPRAPAQSTIRTSLGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMR-----N 209
PAP AP+ + + + P T V +A QSS ++Y Y P +
Sbjct: 115 PAPAAPSAAAAPAPVRSVPSTSPSSVRSATPYYPQTQQQQSSVSSSYSYYPRAAPSYYYS 174
Query: 210 PPAP 221
PPAP
Sbjct: 175 PPAP 178
>SB_30182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +2
Query: 119 SCCCC-CIYSSTFSISKQSPSQL*IYTKHAQPTSSTTSSAYPRTRTSDLYYACSSTTPG 292
+CCCC C +S I S + H+ + T S + R + +YACS G
Sbjct: 279 TCCCCECCHSDKKCIQWFSEKICGTFPSHSTANAFFTKSLF-RAYHREGFYACSKADAG 336
>SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)
Length = 1202
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/70 (27%), Positives = 23/70 (32%), Gaps = 2/70 (2%)
Frame = +3
Query: 24 NMQPTYRPAPRAPAQSTIRTSLGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNM 203
N P P P APA + A A A A+ L Q P Y+ N
Sbjct: 438 NAPPNASPFPNAPANPAAAAAAAAVAAAAATATATATATATAALQEQQMDPYGYQTGQNQ 497
Query: 204 --RNPPAPQP 227
+N P P
Sbjct: 498 YNQNQQVPHP 507
>SB_22648| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +2
Query: 212 TSSTTSSAYPRTRTSDLYYACSSTTPGTETDAWGTTVSTYSEN 340
TS+TTS+ T TS +STT + T + TT TY +
Sbjct: 52 TSTTTSTTTSTTNTSTTTSTTTSTTNTSTTTSTTTTTITYKRD 94
>SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 28.7 bits (61), Expect = 4.0
Identities = 27/102 (26%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Frame = +3
Query: 9 ASAYANMQPTYRPAPRAPA--QSTIRTSLGARPITGQQGVAAAAASIRPPLVSQS-SRPA 179
+S N P+ APA Q+ S P QQ + + PP QS R A
Sbjct: 239 SSTQQNYPPSLSQQSYAPATQQAYPLESQQNYPPMSQQSYSPMSQQSFPPTSQQSFPRSA 298
Query: 180 NYKYTPNMRN--PPAPQPAVHIQGQEPLTSTMLAAAPLQEQK 299
Y P + PP PQ + + Q+ T + P Q+
Sbjct: 299 QQSYPPTSQQSYPPTPQQSYPLTSQQSYLPTSQQSYPPTSQQ 340
>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1929
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/78 (26%), Positives = 36/78 (46%)
Frame = +3
Query: 168 SRPANYKYTPNMRNPPAPQPAVHIQGQEPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHP 347
++P P+++ PPAP PA G L P+++Q++++ + P M P
Sbjct: 1164 AKPPQPPPVPSVQAPPAPPPAPPTMG---LKRNQQPEKPVKQQEKLVKKNNIP----MTP 1216
Query: 348 DLAGKITGMLLEIDNSEL 401
L+G IT L +L
Sbjct: 1217 VLSGLITTDALNAKRGKL 1234
>SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)
Length = 1348
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +3
Query: 45 PAPRAPAQSTIRTS-LGARPITGQQGVAAAAASIRPPLVSQSSRPAN-YKYTP 197
P PR PA+ + RPI+G+ + PP Q +RP N Y+ +P
Sbjct: 359 PRPRLPAREPVAEGGQEGRPISGEGPRHGSLIKEEPPRPPQKTRPMNEYQESP 411
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 212 TSSTTSSAYPRTRTSDLYYACSSTTPGTETDAWGTTVST 328
TS TTS++ P T T +++ P T T G+T +T
Sbjct: 12 TSITTSTSTPSTSTPRAGSTTNTSAPSTSTPRTGSTTTT 50
Score = 27.9 bits (59), Expect = 7.0
Identities = 25/95 (26%), Positives = 42/95 (44%)
Frame = +2
Query: 44 TSTESSGPIYNKNIVRCKTHNWTARSCCCCCIYSSTFSISKQSPSQL*IYTKHAQPTSST 223
TST +G N + T + + S+T + + ++PS T + S+T
Sbjct: 23 TSTPRAGSTTNTSAPSTSTPRTGSTTTTSAPSTSTTSNSTTRAPS-----TSTPRAGSTT 77
Query: 224 TSSAYPRTRTSDLYYACSSTTPGTETDAWGTTVST 328
T+SA P T T +++ P T T G+T +T
Sbjct: 78 TTSA-PSTSTPRTGSTTTTSAPSTSTPRTGSTTTT 111
>SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1758
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -3
Query: 397 SELSISKSIPVIFPAKSGCIL*ISGNSRSPSICFCSWSGAAASIVEVRGSCPWICTAG 224
SEL + + V PA +G I S + C+ SG A S + + +C ++C+AG
Sbjct: 204 SELWLRSHVSVTKPASTGRIPNKSHQAIPKGFCYRFHSGKACSGCDFKHAC-YLCSAG 260
>SB_22143| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1995
Score = 28.3 bits (60), Expect = 5.3
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 12/107 (11%)
Frame = +3
Query: 90 GARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPN-----MRNPPAPQPAVHIQGQE- 251
GA+P+ + AAA AS P+ RPA K P + PP +PAV G++
Sbjct: 518 GAKPVAASKPAAAAPASKPAPV----KRPAAKKGPPKPSGGASKGPPKKKPAVKAGGKKA 573
Query: 252 -PLTSTMLAAAP--LQEQKQMLGERLFP--LIQRM-HPDLAGKITGM 374
P + P E Q LFP L++++ H + ++ GM
Sbjct: 574 GPSATFNEVKEPELTDEDVQAKAADLFPADLLEKLAHTNWKERMAGM 620
>SB_17145| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 369
Score = 28.3 bits (60), Expect = 5.3
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Frame = +3
Query: 21 ANMQPTYRPAPRAPAQSTIRTSLGARPITGQQGVAAAAAS---IRPPLVSQSSRPANY-K 188
A P P P+ G P G Q + A ++ P + Q + + +
Sbjct: 207 AQAVPQVVPLPQGKYLPQTPKIYGKAPFIGPQTITPNANGEYEVKFPSMMQIGKTYEFDQ 266
Query: 189 YTPNMRNPPAPQPAVHIQGQEPLTSTML 272
P MR PP PQP Q Q+P+ + M+
Sbjct: 267 VIPAMRAPP-PQPYNSYQQQQPMQNPMM 293
>SB_11259| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
Length = 772
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 156 VSQSSRPANYKYTPNMRNPPAPQPAVHIQGQEPLTSTMLAAAPLQEQKQM 305
V + P + YTP+MR PP A +P T +P +E ++M
Sbjct: 603 VQRKPYPCSPSYTPSMRAPPGTPEAT--TPSDPPPDTKRYISPTEESRRM 650
>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4538
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 236 YPRTRTSDLYYACSSTTPGTETDAWGTTVSTYSENAP*F 352
YPR R D Y+ C T TD + S+ + +P F
Sbjct: 2522 YPRIRDLDFYWFCYKKTRNVTTDIDALSASSPLQQSPEF 2560
>SB_40330| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 27.9 bits (59), Expect = 7.0
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = +2
Query: 140 YSSTFSISKQSPSQL*IYTKHAQPTSSTTSSAYPRTRTSDLYYACSSTTPGTETDAWGTT 319
Y+ST S + +PS T + TS T++S+Y T + + +STT T T ++ +T
Sbjct: 14 YTSTTSYTS-TPSYT-STTSYTSTTSYTSTSSYTSTTSYTSTTSYTSTTSYTSTPSYTST 71
Query: 320 VS 325
S
Sbjct: 72 TS 73
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 1/81 (1%)
Frame = +3
Query: 45 PAPRAPAQSTIRTSLGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPPAPQ 224
P+P AP Q+T + + +++ P + ++ P K TP P P
Sbjct: 59 PSPTAPTQTTPTPATPTPTTPTPKTPTPTTSTLTKP--TPATTPTPTKPTPTAHTPTTPT 116
Query: 225 PAVHIQGQ-EPLTSTMLAAAP 284
P H + P T T P
Sbjct: 117 PTAHTPTKPTPKTPTPTTPTP 137
>SB_29302| Best HMM Match : LRR_1 (HMM E-Value=1.1e-11)
Length = 606
Score = 27.9 bits (59), Expect = 7.0
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = +2
Query: 122 CCCCCIYSSTFSISKQSPS 178
CCCCC + F K P+
Sbjct: 513 CCCCCFFCFNFCCGKCKPN 531
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 203 AQPTSSTTSSAYPRTRTSDLYYACSSTTPGTETDAWGTTVSTYSENAP 346
A P+S T +SAYP + T+ Y +TT + T S + P
Sbjct: 230 AYPSSYTAASAYPSSYTAASVYLSETTTAASAYPPSYTAASVSTSTEP 277
>SB_51034| Best HMM Match : Extensin_2 (HMM E-Value=0.038)
Length = 354
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 147 PPLVSQSSRPANYKYTPN-MRNPPAPQPAVHIQG 245
PP RPA++ P M PPAP P H G
Sbjct: 77 PPGPYYQGRPAHWHQPPGGMSYPPAPPPPGHAAG 110
>SB_41862| Best HMM Match : POR_N (HMM E-Value=3.5)
Length = 994
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = -1
Query: 360 SQPNQGAFSE*VETVVPQASVSVPGVVLLQA**RSEVLVLGYALLVVELVGCACL 196
S+P+ A + V V++ VL A R +VLV+G L+++++G CL
Sbjct: 596 SRPSLLAEPSVMNEVSAVVCVALRVAVLCAACVRDDVLVIGNDALLIDVIGITCL 650
>SB_59684| Best HMM Match : C1_3 (HMM E-Value=8.3)
Length = 138
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 101 GSCT*RCSYCRLGRSSRCWSVSGLHICICRC 9
G C RC CR+ R C + + C+ RC
Sbjct: 53 GCCVMRCVACRVMRCVACCVMRCVACCVMRC 83
>SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59)
Length = 218
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 101 GSCT*RCSYCRLGRSSRCWSVSGLHICICRC 9
G C RC CR+ R C + + C+ RC
Sbjct: 133 GCCVMRCVACRVMRCVACCVMRCVACCVMRC 163
>SB_26832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +3
Query: 45 PAPRAPAQSTIRTSLGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPPAPQ 224
P RAP S + + +G + A A +R +V ++ RP + + PPA
Sbjct: 567 PVRRAPRPSESSAAAHSSERSGGKAAAEGEAWVR--VVDENVRPPSQAKVTTTKTPPATA 624
Query: 225 PA 230
PA
Sbjct: 625 PA 626
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,248,497
Number of Sequences: 59808
Number of extensions: 380491
Number of successful extensions: 1587
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1571
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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