Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1999
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase... 120 3e-28
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 82 9e-17
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 72 8e-14
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 31 0.13
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 30 0.31
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 27 2.2
SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c... 27 2.9
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 27 3.8
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 26 5.0
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 26 6.6
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc... 26 6.6
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe... 26 6.6
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ... 26 6.6
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 25 8.7
>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 112
Score = 120 bits (288), Expect = 3e-28
Identities = 55/92 (59%), Positives = 67/92 (72%)
Frame = +2
Query: 179 KHGDMLTMHYTGTLDDGHKFDSSYDRDQPFTFQIGVGQVIKGWDQGLLDMCVGEKRKLTI 358
K GD +TMHYTGTL +G KFDSS DR PF IGVGQ+I+GWD+G+ M +GEK KLTI
Sbjct: 18 KPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGWDEGVPKMSLGEKAKLTI 77
Query: 359 PASLGYGERGAGNVIPPHATLHFEVELINIGD 454
GYG RG +IPP++TL F+VEL+ I D
Sbjct: 78 TPDYGYGPRGFPGLIPPNSTLLFDVELLAIND 109
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 81.8 bits (193), Expect = 9e-17
Identities = 44/115 (38%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Frame = +2
Query: 110 AGPEVTELKTEVV--SVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSSYDRDQPFTFQIG 283
+ P+ LK VV V G + +G + M Y G L++G FD + + +PF F +G
Sbjct: 248 SSPKTRTLKGGVVVTDVKTGSGASATNGKKVEMRYIGKLENGKVFDKN-TKGKPFAFILG 306
Query: 284 VGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGERGAGNVIPPHATLHFEVELINI 448
G+VI+GWD G+ M G +RK+TIPA + YG + IP ++TL FEV+L+ +
Sbjct: 307 RGEVIRGWDVGVAGMQEGGERKITIPAPMAYGNQSIPG-IPKNSTLVFEVKLVRV 360
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 72.1 bits (169), Expect = 8e-14
Identities = 39/110 (35%), Positives = 63/110 (57%)
Frame = +2
Query: 119 EVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSSYDRDQPFTFQIGVGQVI 298
+V E V +G +K ++M Y G L +G FD + +PFTF +G+ +VI
Sbjct: 254 QVLEGNVTVQDKVKGDGPAAKRKKRVSMRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVI 312
Query: 299 KGWDQGLLDMCVGEKRKLTIPASLGYGERGAGNVIPPHATLHFEVELINI 448
KGWD G++ M VG +R + IPA++ YG + IP ++ L F+V+L+ +
Sbjct: 313 KGWDVGIVGMQVGGERTIHIPAAMAYGSKRLPG-IPANSDLVFDVKLLAV 361
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 31.5 bits (68), Expect = 0.13
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 518 EEVSDYLKKQMVPADGGEVSEDIKQMLESHDKLGXGNLP 634
E+ + + K+M ADG E+S K+ LE+ K G NLP
Sbjct: 826 EKKIEIIAKEMYGADGIELSPLAKERLETFTKQGYNNLP 864
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 30.3 bits (65), Expect = 0.31
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 500 DNMLSREEVSDYLKKQMVPADGGEVSEDIKQMLESHDKLGXGNLP 634
D+ S E+ + + K+M A+G E S K+ + + K G GNLP
Sbjct: 852 DSETSIEDKVNVIAKEMYGANGVEFSSLAKERINTFIKQGFGNLP 896
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -3
Query: 427 EMQCSVGRNHVAGSALSVAQGCGNSQFTFFTNAHVKQALVPSL 299
++ ++GR H+AG + GC Q +F + V ++ SL
Sbjct: 996 QLSYNLGRLHIAGDYIFSCVGCRTLQRSFLSGLSVCTGIIDSL 1038
>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
2|||Manual
Length = 221
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = +2
Query: 380 ERGAGN-VIPPHATLHFEVEL 439
E G GN +IPP + H+EVEL
Sbjct: 42 EPGHGNLIIPPDVSAHYEVEL 62
>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 312
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 60 RRCAACLCWLPWPGPRSRV 116
R C C CWLP SRV
Sbjct: 113 RMCGTCKCWLPDRSHHSRV 131
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 26.2 bits (55), Expect = 5.0
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +2
Query: 245 SYDRDQPFTFQIGVGQVIKGWDQGLL---DMCVGEKRKLTIPASLGYGERGAGNVIP 406
SY +QP T + G+ Q G QGLL +G R+ SLG + G +P
Sbjct: 1549 SYYAEQPETIEQGLRQGYSGLKQGLLGAKSTLMGLPRETRSHKSLGGVAQTVGRKVP 1605
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 377 GERGAGNVIPPHATLHFEVELINIGDSP 460
G+ G+G + P AT +FE ++ NI D P
Sbjct: 376 GKLGSGLINPLVATQNFEYKMSNILDKP 403
>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 381
Score = 25.8 bits (54), Expect = 6.6
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +2
Query: 434 ELINIGDSPPATNVFKEIDADXDNMLSREEVSDYLKK--QMVPADGGEVSEDIK 589
E +N V + I+ D R++V DYLKK Q + + E E +K
Sbjct: 296 EKLNDASYDQTRRVLQYINGFSDGSRDRQDVEDYLKKVLQELLCEAEECKEKVK 349
>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 229
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 104 TFAGPEVTELKTEVVSVPEGCTTKSKH 184
TF ++T L+ +++ +PEG +T KH
Sbjct: 174 TFDDLQLTPLQRKLMGLPEGGSTSGKH 200
>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 315
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 410 HATLHFEVELINIGDSPPATNVFKEIDADXDNMLSREEVSD-YLKKQ 547
H L+ + ELI+ S VF+ ID N+ R+ D Y+K++
Sbjct: 265 HKDLNEDEELISSSPSEVGKRVFRLIDLSTGNVYRRDTGGDIYVKRK 311
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 578 EDIKQMLESHDKLGXGNLPARRXRQKW 658
EDIKQ+L ++ +G NL R W
Sbjct: 15 EDIKQLLAANCHIGSKNLEVRMDNYVW 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,949,548
Number of Sequences: 5004
Number of extensions: 58570
Number of successful extensions: 163
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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