Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1997
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   1.2  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    25   4.7  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    25   8.2  

>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 133 QPYTFE-GRGHVPAASA*KTKVTNANTPNRNVIEPILFFFCS 11
           QPY +E G G      A  T +TN   PN N+  P+    C+
Sbjct: 501 QPYHYEIGSGLPQQMHATNTILTNPIDPNSNISTPVGMHLCT 542


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 308 GVALDVLTVNARSAGCVFARAPGASAVSSRL*T 210
           G+A++  T  ARSA  +   APG SA+   L T
Sbjct: 646 GIAVEGATDAARSAADIVFLAPGLSAIIDALKT 678


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 229 TAEAPGALA-NTQPAERAFTVRTSSATPTKYASVIQ 333
           +A APG  A +T+  ER   +RT   TP +  S +Q
Sbjct: 108 SANAPGIGAFSTEELERQELIRTGKVTPFRNLSGLQ 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,794,368
Number of Sequences: 5004
Number of extensions: 31323
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)