Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1997
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0597 + 4438858-4439847,4439936-4440067,4440397-4441176,444...    32   0.29 
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787...    30   0.88 
02_01_0660 - 4913033-4913368                                           28   4.7  
05_06_0237 + 26618195-26618425,26618518-26618640,26619569-266197...    27   6.2  
09_04_0239 + 15954995-15956242                                         27   8.2  
04_04_0978 - 29856872-29858023                                         27   8.2  

>07_01_0597 +
           4438858-4439847,4439936-4440067,4440397-4441176,
           4441359-4441646,4441710-4441808
          Length = 762

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +1

Query: 124 CTVAALNARRTTNVHTARFAVLIRATPSRVQSRLLTAEAPGALANTQPAERAFTVRTSSA 303
           CTVAA+  R     + A   + +         RLL A AP A A  Q  +  + V+T  +
Sbjct: 71  CTVAAVRLRADALTNEAYADITLDPVADHDVPRLLPAPAPAAAAGGQQQQLRYFVKTLMS 130

Query: 304 TPTKY 318
           +  +Y
Sbjct: 131 SDAEY 135


>05_05_0230 -
           23476919-23477372,23477656-23477695,23478578-23478700,
           23479114-23479151,23479289-23479674,23479875-23481053,
           23481805-23481928,23482733-23482779
          Length = 796

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +1

Query: 142 NARRTTNVHTARFAVLIR-ATPSRVQSRLLTAEAPGALANTQPAERAFTVRTSSATPTK 315
           ++ RT  ++T+  +V  R  TPSR  S ++  +   A +   PA  +  V+T  +TPTK
Sbjct: 92  SSNRTAVLNTSISSVSSRPTTPSRRSSTVVAPKQSIAASRPVPARSSTPVKTRPSTPTK 150


>02_01_0660 - 4913033-4913368
          Length = 111

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 90  EAAGTCPLPSKVYGCSPKCKEDYECTH 170
           +AA   P PSK +GC+P   +D  C H
Sbjct: 40  DAAAAAPAPSKGHGCNP--LKDKTCRH 64


>05_06_0237 +
           26618195-26618425,26618518-26618640,26619569-26619736,
           26619824-26621497
          Length = 731

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +3

Query: 18  KKNKMGSMTFLLGVFALVTFVFYAEAAGTCPLP 116
           +++  G M FL+ V ALVTFV + + A +C +P
Sbjct: 363 RRSLFGYMGFLVAV-ALVTFVGFVKGAISCYIP 394


>09_04_0239 + 15954995-15956242
          Length = 415

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 79  SSTPKPLA-RALFLRKCTVAALNARRTTNVHTAR 177
           +ST  P+A R    R+CT+    A +TT++H  R
Sbjct: 354 TSTSSPMAKRRRRRRRCTLHGAGAEKTTSMHALR 387


>04_04_0978 - 29856872-29858023
          Length = 383

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 222 AAYGGGTGSSSKHATG 269
           AAYGGG GS  +H  G
Sbjct: 101 AAYGGGAGSGGRHGHG 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,564,427
Number of Sequences: 37544
Number of extensions: 218083
Number of successful extensions: 820
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)