Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1992
(540 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0456 + 29521282-29522064 29 1.8
03_05_0183 - 21681673-21682524 29 2.4
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 29 2.4
06_03_1448 + 30235336-30236763 29 3.1
06_03_1443 + 30182018-30183445 29 3.1
06_03_1440 + 30166515-30167942 29 3.1
06_03_1437 + 30151030-30152457 29 3.1
06_03_1429 + 30100834-30102261 29 3.1
06_03_1425 + 30084383-30085810 29 3.1
06_03_1420 - 30053713-30055140 29 3.1
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 3.1
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 3.1
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 4.1
08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692 27 7.2
03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399 27 7.2
01_06_1759 + 39689410-39689573,39689728-39689923,39690014-396901... 27 7.2
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 27 9.6
02_05_0597 + 30245455-30245767,30246693-30246760,30246851-302469... 27 9.6
>01_06_0456 + 29521282-29522064
Length = 260
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = -1
Query: 192 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER----NXVRPPILSTA 70
AW+C P +G+RG +RRR P S R R + +RP + S A
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 420 SQAFIATLLFDPSMSALPIIAKQNSPS 500
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 359 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 466
YK F A G RKV GIT + PS+ D+AF S +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669
>06_03_1448 + 30235336-30236763
Length = 475
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 197 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 60
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1443 + 30182018-30183445
Length = 475
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 197 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 60
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1440 + 30166515-30167942
Length = 475
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 197 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 60
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1437 + 30151030-30152457
Length = 475
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 197 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 60
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1429 + 30100834-30102261
Length = 475
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 197 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 60
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1425 + 30084383-30085810
Length = 475
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 197 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 60
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1420 - 30053713-30055140
Length = 475
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 197 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 60
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 125 TTLHAWNETPCARRYY 78
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 133 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 222
+KR P K PA S S+ LPG + + G SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 212 PPQSNSPPGSVLEPDHAGVLNGDE 141
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
>08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692
Length = 455
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 56 GRKRCAVD-NIGGRTXFRSKRAEW*RGGNARRRLKLPRDPVRGHCQAGSLTGA 211
GR+ C+VD +GG F GG A+ R+ + +P +G A + TGA
Sbjct: 48 GRQECSVDLKLGGLGEFG--------GGGAQPRVAVAGEPAKGKGPAAAATGA 92
>03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399
Length = 146
Score = 27.5 bits (58), Expect = 7.2
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +2
Query: 41 ITYSVGRK-RCAVDNIGGRTXFRSKRAEW*RGGNARRRLKLPRDPVRGHCQAGSLTGAVH 217
++YS GR+ RC + +R E G +RR L D +RG+ + A H
Sbjct: 50 VSYSHGRRLRCIAEG---------RREEEEEVGRSRRGKDLDLDDMRGYGET-----ATH 95
Query: 218 LSKNNAGVLXPAQRGQKPRVEQKGK 292
AG + RG KPRV+ G+
Sbjct: 96 HGLRLAGREEVSPRGGKPRVDNGGR 120
>01_06_1759 +
39689410-39689573,39689728-39689923,39690014-39690103,
39690221-39690277,39690391-39690460,39690747-39690811,
39691408-39691462,39691704-39691831,39691919-39691950,
39692205-39692274,39692723-39692824,39692921-39693010,
39693084-39693232,39693620-39693731,39695332-39695412,
39695481-39695705,39695815-39695937,39696021-39696137
Length = 641
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 248 ALGHLRYSLTDVPPQSNSPPGSVLEP 171
ALGH+ L + P ++ PP ++P
Sbjct: 494 ALGHIELDLPEAPEKAPKPPAQAVDP 519
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 89 GRTXFRSKR--AEW*RGGNARRRLKLPRDPVRGHCQAGSLTGA 211
G+T R R A W RG A RR +LP G +AG G+
Sbjct: 36 GQTLTRGPRTCAVWRRGRAAVRRRRLPAASAEGGAKAGRSLGS 78
>02_05_0597 +
30245455-30245767,30246693-30246760,30246851-30246939,
30247047-30247212,30247296-30247585,30247692-30247896,
30248013-30248170,30248352-30248595
Length = 510
Score = 27.1 bits (57), Expect = 9.6
Identities = 9/42 (21%), Positives = 21/42 (50%)
Frame = -3
Query: 172 RITREF*TATSVSATSPLCTLGTKXRAPADIIDRAPLPPNRV 47
R+ + + + + + T+ P ++++APLPP R+
Sbjct: 65 RVLKGWPSCRTAQEAASAALAATRLPMPVPVVEKAPLPPKRI 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,604,175
Number of Sequences: 37544
Number of extensions: 342442
Number of successful extensions: 1043
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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