Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1992
         (540 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069812-1|AAL39957.1|  937|Drosophila melanogaster SD05477p pro...    29   3.1  
AE014298-1945|AAN09334.1|  937|Drosophila melanogaster CG32627-P...    29   3.1  
AE014298-1944|AAF48304.2| 1201|Drosophila melanogaster CG32627-P...    29   3.1  

>AY069812-1|AAL39957.1|  937|Drosophila melanogaster SD05477p
           protein.
          Length = 937

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 25/84 (29%), Positives = 39/84 (46%)
 Frame = -2

Query: 335 FAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEPDHAGV 156
           FA+P   ++ D +   P  P E  V+ E  + H+ Y +  VP   N+P G+ L+P   G 
Sbjct: 181 FALPKDKDN-DCSQQAPRWPVECQVIEERII-HIPY-VPAVPEPLNAPTGNELKPRPVGE 237

Query: 155 LNGDERFRHVTTLHAWNETPCARR 84
            NG   F +        E P A++
Sbjct: 238 ENGIVVFSYSPISAVNYEKPKAKK 261


>AE014298-1945|AAN09334.1|  937|Drosophila melanogaster CG32627-PB,
           isoform B protein.
          Length = 937

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 25/84 (29%), Positives = 39/84 (46%)
 Frame = -2

Query: 335 FAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEPDHAGV 156
           FA+P   ++ D +   P  P E  V+ E  + H+ Y +  VP   N+P G+ L+P   G 
Sbjct: 181 FALPKDKDN-DCSQQAPRWPVECQVIEERII-HIPY-VPAVPEPLNAPTGNELKPRPVGE 237

Query: 155 LNGDERFRHVTTLHAWNETPCARR 84
            NG   F +        E P A++
Sbjct: 238 ENGIVVFSYSPISAVNYEKPKAKK 261


>AE014298-1944|AAF48304.2| 1201|Drosophila melanogaster CG32627-PA,
           isoform A protein.
          Length = 1201

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 25/84 (29%), Positives = 39/84 (46%)
 Frame = -2

Query: 335 FAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEPDHAGV 156
           FA+P   ++ D +   P  P E  V+ E  + H+ Y +  VP   N+P G+ L+P   G 
Sbjct: 181 FALPKDKDN-DCSQQAPRWPVECQVIEERII-HIPY-VPAVPEPLNAPTGNELKPRPVGE 237

Query: 155 LNGDERFRHVTTLHAWNETPCARR 84
            NG   F +        E P A++
Sbjct: 238 ENGIVVFSYSPISAVNYEKPKAKK 261


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,099,638
Number of Sequences: 53049
Number of extensions: 534979
Number of successful extensions: 1636
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1636
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2053700352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)