Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1987
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0201 - 21545189-21545494,21545593-21545743,21545835-215460...    30   2.5  
09_06_0200 + 21539963-21541271,21541912-21542013,21542095-215422...    29   5.7  
09_06_0194 - 21469815-21470117,21470226-21470376,21470463-214707...    28   7.5  
07_03_0040 + 12723576-12724148                                         28   9.9  

>09_06_0201 -
           21545189-21545494,21545593-21545743,21545835-21546072,
           21546158-21546365,21546446-21546639,21546721-21546819,
           21546886-21546922,21548242-21548775
          Length = 588

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 125 IIKFCISDVIATCVRYVXLCLYSSAYVEMLM*SVLFVCEHG 3
           II  C+ D +  C+    LC+  +     LM S +F+ E+G
Sbjct: 505 IIGSCLLDEVLLCIHVALLCVQDNPNDRPLMSSTVFILENG 545


>09_06_0200 +
           21539963-21541271,21541912-21542013,21542095-21542291,
           21542396-21542603,21542685-21542922,21543010-21543160,
           21543538-21543849
          Length = 838

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 125 IIKFCISDVIATCVRYVXLCLYSSAYVEMLM*SVLFVCEHG 3
           I+  C+ D +  C+    LC+  +     LM  V+F+ E+G
Sbjct: 753 IMDSCLQDEVLLCIHLALLCVQENPDDRPLMPFVVFILENG 793


>09_06_0194 -
           21469815-21470117,21470226-21470376,21470463-21470700,
           21470784-21470991,21471107-21471309,21471407-21471508,
           21471622-21472945
          Length = 842

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 125 IIKFCISDVIATCVRYVXLCLYSSAYVEMLM*SVLFVCEHG 3
           I+  C+ D +  C+    LC+  +     LM SV+ + E+G
Sbjct: 760 IVASCLLDEVMLCIHVGLLCVQENLNDRPLMSSVMLILENG 800


>07_03_0040 + 12723576-12724148
          Length = 190

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -3

Query: 399 MHNLSLCFCDVKVASISHMRCYKVTYAIFVKTEPSMRKYILVENTFNS*RD 247
           +H+L L    + +  + H+ C KV   +  KT   MR+ + + N F    D
Sbjct: 125 LHDLLLVAHLLDIKGLFHITCRKVADMLKGKTSEEMRQILNIRNDFTEEED 175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,195,488
Number of Sequences: 37544
Number of extensions: 274686
Number of successful extensions: 373
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)