Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1987
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical ...    30   2.2  
Z81139-6|CAH60791.2|  358|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical
            protein F25G6.9 protein.
          Length = 1373

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 656  KLNILYFCNFTGNERTNCCQNAIKALV-HQKMALNDK 549
            K+NI   C+  G E +N  +NAI AL+ H+   L+ K
Sbjct: 1193 KMNIRRICDIFGKEESNSKKNAICALISHESRTLSRK 1229


>Z81139-6|CAH60791.2|  358|Caenorhabditis elegans Hypothetical
           protein W05H5.8 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = +3

Query: 336 STSCAILRRLLRHKSTKTDYALKFEISKVICVFKNLVSVFVRVLSEEF 479
           S S  +   LL HK    D  L + IS   CV   L  VFV+VL+E F
Sbjct: 178 SLSIFVSFALLFHKINPCDAQLPWIIS---CVLTLLACVFVKVLNESF 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,526,596
Number of Sequences: 27780
Number of extensions: 291572
Number of successful extensions: 506
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)