Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1986
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0719 + 10654842-10654977,10655039-10655124,10655226-106570...    30   1.5  
09_04_0446 - 17680408-17680721,17680812-17681108,17682740-17683490     30   2.0  
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085...    29   3.5  
04_04_0766 - 27923120-27923554,27923843-27924580,27924815-279248...    29   4.7  
12_01_0304 - 2299676-2299938,2300493-2300841                           28   6.2  
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975...    28   6.2  

>03_02_0719 +
           10654842-10654977,10655039-10655124,10655226-10657001,
           10657782-10657926,10658017-10658735
          Length = 953

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +3

Query: 75  VRRGPTHSGSGQPQPVPXDVRHQRRAQLDSRGAGVTAGALQRIQNPDLDRRRGGP 239
           ++R P +SGS Q   VP  V    R  LD R   + +  ++R Q   L  R   P
Sbjct: 146 LKRSPEYSGSDQFSYVPRRVDGYMRKPLDLRAQKMPSSPIERFQIETLPPRSAKP 200


>09_04_0446 - 17680408-17680721,17680812-17681108,17682740-17683490
          Length = 453

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 212 WILYPLKCPRSDSGATGVQLSTALVPDVTWDRLRL 108
           W+++  +CP     A     +  + P +TWDR+RL
Sbjct: 353 WVVFYTECPLKAVTANLSITNNIVAPRITWDRIRL 387


>04_04_1263 - 32207636-32207938,32208020-32208170,32208263-32208500,
            32208604-32208814,32208927-32209108,32209196-32209297,
            32210002-32211187,32212103-32212499,32212551-32212582,
            32212885-32213157,32213307-32213394,32213486-32213723,
            32213824-32214034,32214119-32214300,32214378-32214479,
            32214801-32216224,32216751-32216822,32217688-32217719,
            32218186-32218263,32218425-32218512,32218608-32218845,
            32219060-32219162,32219386-32219558,32219644-32219745,
            32219825-32220606,32220659-32221012,32224055-32224140,
            32224250-32224400,32224534-32224771,32224876-32225119,
            32225190-32225368,32225577-32225675,32225835-32227083
          Length = 3195

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 64   VIGWSGEDRPTQAPGNLSLSXVTSGTSAVLSWTPVAPESLRGHFKG 201
            ++ W G D P+   GN SLS   +    VL W   +P    G + G
Sbjct: 2552 IVSWKGPDDPST--GNFSLSGDPNSDFQVLVWNGTSPYWRSGAWNG 2595


>04_04_0766 -
           27923120-27923554,27923843-27924580,27924815-27924874,
           27925281-27925328
          Length = 426

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 72  LVRRGPTHSGSGQPQPVPXDVRHQRRAQLDSRGAGVTAGALQRIQNPDL 218
           L +R      S QP P P + R +R+ + +  G  V+AGA ++   P++
Sbjct: 299 LEKRVEELESSSQPSPCPLETRSRRKCR-EITGKKVSAGAKRKAPAPEV 346


>12_01_0304 - 2299676-2299938,2300493-2300841
          Length = 203

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +3

Query: 54  SH*SDRLVRRGPTHSGSGQPQPVPXDVRHQRRAQL-DSRGAGVTAGALQRIQNPDLDRRR 230
           +H S+     GP  +GSG P P        RR +L D+ G G TA  L R+    +D   
Sbjct: 44  AHPSEGSRGSGPHAAGSGLPGPNLAGKLQGRRPRLHDNGGGGATARQL-RLDGVGVDGAG 102

Query: 231 GGPAQGDLCG 260
            G   G L G
Sbjct: 103 CGVVSGRLDG 112


>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
            21497679-21497889,21497977-21498170,21498263-21498364,
            21498525-21499879,21501193-21501494,21501600-21501750,
            21501838-21502102,21502155-21502362,21502467-21502660,
            21502749-21502850,21503481-21503680,21504010-21504846,
            21505806-21506107,21506209-21506359,21506447-21506684,
            21506764-21506971,21507078-21507271,21507322-21507462,
            21513484-21514811,21515923-21516227,21516331-21516481,
            21516570-21516807,21516881-21517088,21517197-21517366,
            21517451-21517549,21517708-21519029,21521601-21521683
          Length = 3314

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = +1

Query: 64   VIGWSGEDRPTQAPGNLSLSXVTSGTSAVLSWTPVAPESLRGHFKGYKIQT 216
            ++ W G D P+  PG+ S          V  W    P S  G + GY + +
Sbjct: 1044 LVSWKGPDDPS--PGSFSFGGDPDTFLQVFIWNGTRPVSRDGPWTGYMVSS 1092


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.130    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,486,950
Number of Sequences: 37544
Number of extensions: 272194
Number of successful extensions: 746
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)